Glyma13g05340 - SoyBase

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Report for Sequence Feature Glyma13g05340

Feature Type:	gene_model
Chromosome:	Gm13
Start:	5626640
stop:	5632924
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g05340

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G39830	AT	Annotation by Michelle Graham. TAIR10: Trypsin family protein with PDZ domain \| chr5:15942883-15945676 FORWARD LENGTH=448	SoyBase	E_val: 0	ISS
GO:0000023	GO-bp	Annotation by Michelle Graham. GO Biological Process: maltose metabolic process	SoyBase	N/A	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0010027	GO-bp	Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization	SoyBase	N/A	ISS
GO:0010206	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosystem II repair	SoyBase	N/A	ISS
GO:0019252	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process	SoyBase	N/A	ISS
GO:0019761	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009534	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid	SoyBase	N/A	ISS
GO:0009543	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid lumen	SoyBase	N/A	ISS
GO:0009579	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid	SoyBase	N/A	ISS
GO:0031977	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid lumen	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004252	GO-mf	Annotation by Michelle Graham. GO Molecular Function: serine-type endopeptidase activity	SoyBase	N/A	ISS
GO:0008233	GO-mf	Annotation by Michelle Graham. GO Molecular Function: peptidase activity	SoyBase	N/A	ISS
GO:0008236	GO-mf	Annotation by Michelle Graham. GO Molecular Function: serine-type peptidase activity	SoyBase	N/A	ISS
KOG1320	KOG	Serine protease	JGI		ISS
PTHR22939	Panther	SERINE PROTEASE FAMILY S1C HTRA-RELATED	JGI		ISS
PTHR22939:SF21	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00089	PFAM	Trypsin	JGI		ISS
UniRef100_B9SEF2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protease degQ, putative n=1 Tax=Ricinus communis RepID=B9SEF2_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1LWK0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LWK0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g05340

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g05340 not represented in the dataset	Glyma13g05340 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g05340 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g063400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g05340

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g05340

Limit To All Plant Sequences

>Glyma13g05340.1   sequence type=CDS   gene model=Glyma13g05340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAAGTATTGTTATCATCATGCAATTTGTGGTCACTTGGAGTGCCAACCCACAGTCACAGAGGAAGAAGAAGCAGTGTCCTCAGCCGCCGTGAGATCTGCTTTGATGGAATGTCCTCTGTCTGCTCAAACGACGCCGTTTCGCCCATCTCCATTTCAAGCACTGTTCAAGTTCAAGATGAAACTCTGGATTTTGGTGCAATGCTGAGGAAGATTGTTCTGTCTCCAACACGACGTGTGTTAGTGGTGAGCTTGACTATGTATTCCTGTTTGTGCTCTTCAAGGTTCTTGTCAGCTCTAGCTTTGGGAGATCCATCAGTGAAACTTGAAGAAGTAACCCCTCCTGTGTTTTCTTCTGGTCCACTCTTTCCAATAGAGGATCGAATTGTCCAACTATTTGAAAGAAACACATACTCTGTTGTTAACATCTTTGATGTGACATTACGTCCTCAGCTTAATGTAACTGGTGTGGTTGAGATTCCTGAAGGAAATGGTTCTGGAGTAGTTTGGGATGAGGAGGGCCACATTGTGACAAATTATCATGTAATTGGCAATGCCCTTTCAAGAAACCCAAATTCTGGTGAGGTTGTTGCCCGAGTTAATATTCTAGCATCAGAAGGGTTACAGAAGAATTTTGAAGGTAGACTCATTGGAGCTGACCGTTTAAAGGATCTTGCTGTCTTGAAGGTAGAAGCCCCTAAAGATATTTTAAGGCCTATCAAGGTGGGTCAATCGTCATCTCTAAAAGTTGGGCAGCAATGTTTGGCTATTGGAAATCCATTTGGCTTTGATCACACCCTCACAGTTGGGGTTATTAGTGGACTTAACCGAGACATCTCTAGTCAAACTGGGGTAACAATTGGTGGTGGTGTTCAAACTGATGCAGCCATAAATCCTGGGAACAGCGGAGGTCCCCTTTTGGATTCGAAAGGGAGCTTAATTGGGATTAATACTGCAATATTTACTAGGACAGGGACATCAGCTGGTGTAGGATTTGCAATCCCATCTTCAACTGTATTGCGAATTGTTCCACAGCTGATCCAATTCGGAAAAGTTGTTAGAGCTGGTTTAAATGTGGATATTGCGCCAGACTTAATTGCAAACCAACTTAATGTTCGAAATGGAGCTCTTGTTCTTCTGGTTCCTGCAAATAGTCTTGCTGCCAAAGCTGGGCTAAATCCCACTACAAGGGGTTTTGCTGGGAATATAGTCCTTGGAGATATCATTGTTGCAGTTGACAATAAGCCTGTCAAGAGCAAAGCTGACTTGTTGAAAGCATTGGATGACTATAATGTTGGAGATAAGGTAGTTTTGATGATTCAGAGGGGCAGTGAAAAGTTGGAGCTGCCTGTGGCACTGGAGGAACAAAGTTCTTGA

Predicted protein sequences of Glyma13g05340

Limit To All Plant Sequences

>Glyma13g05340.1   sequence type=predicted peptide   gene model=Glyma13g05340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQVLLSSCNLWSLGVPTHSHRGRRSSVLSRREICFDGMSSVCSNDAVSPISISSTVQVQDETLDFGAMLRKIVLSPTRRVLVVSLTMYSCLCSSRFLSALALGDPSVKLEEVTPPVFSSGPLFPIEDRIVQLFERNTYSVVNIFDVTLRPQLNVTGVVEIPEGNGSGVVWDEEGHIVTNYHVIGNALSRNPNSGEVVARVNILASEGLQKNFEGRLIGADRLKDLAVLKVEAPKDILRPIKVGQSSSLKVGQQCLAIGNPFGFDHTLTVGVISGLNRDISSQTGVTIGGGVQTDAAINPGNSGGPLLDSKGSLIGINTAIFTRTGTSAGVGFAIPSSTVLRIVPQLIQFGKVVRAGLNVDIAPDLIANQLNVRNGALVLLVPANSLAAKAGLNPTTRGFAGNIVLGDIIVAVDNKPVKSKADLLKALDDYNVGDKVVLMIQRGSEKLELPVALEEQSS*

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