Glyma13g05330 - SoyBase

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Report for Sequence Feature Glyma13g05330

Feature Type:	gene_model
Chromosome:	Gm13
Start:	5619924
stop:	5624650
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g05330

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G39840	AT	Annotation by Michelle Graham. TAIR10: ATP-dependent RNA helicase, mitochondrial, putative \| chr5:15946769-15949186 FORWARD LENGTH=776	SoyBase	E_val: 0	ISS
GO:0009220	GO-bp	Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0004004	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP-dependent RNA helicase activity	SoyBase	N/A	ISS
GO:0004386	GO-mf	Annotation by Michelle Graham. GO Molecular Function: helicase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016817	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on acid anhydrides	SoyBase	N/A	ISS
KOG0953	KOG	Mitochondrial RNA helicase SUV3, DEAD-box superfamily	JGI		ISS
PTHR12131	Panther	ATP-DEPENDENT RNA AND DNA HELICASE	JGI		ISS
PF00271	PFAM	Helicase conserved C-terminal domain	JGI		ISS
PF12513	PFAM	Mitochondrial degradasome RNA helicase subunit C terminal	JGI		ISS
UniRef100_B9SEF1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ATP-dependent RNA and DNA helicase, putative n=1 Tax=Ricinus communis RepID=B9SEF1_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233C0B2	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233C0B2 related cluster n=1 Tax=unknown RepID=UPI000233C0B2	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g05330

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g05330

Paralog	Evidence	Comments
Glyma19g02570	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g05330 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g063500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g05330

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g05330

Limit To All Plant Sequences

>Glyma13g05330.1   sequence type=CDS   gene model=Glyma13g05330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTAGAGGTCTCTTCCACTTGTGCACACGCAAGAGAATCCTCTCAAAGCTTCAAGCTCTTCTCTTCATCAACCACTCCCAATTCCACACTTTTCAGAACCCGGTTTCCCCAATTTCGACCCGTTTCTCGAACCCGCTCCTTCGCCCCAGATTCTCCCAAAGTTCGAAACTTCCCGGCGAAAGATTCCGCCCCACCAGGCCGTTTTCCGCCGCTGGCAACGAGGGTGGCGCCACCGAGACGCCGGAAGGTGAGTTCAAAACTGATTTTGAGCTTGGAGATGAGGTTATTAATAGTGTTCATGGTTTTTCTGAACATGGGGTCGTTGCAAATGATGAGAGTAATGACTGCAATTTAGAGATCGTTGATTCTGCAGAATGTAGTAGTAGTAGTAATAATGGTGGTGGTGGTGGTGGTGGTGGAAGTGATACTAACAATGAGTTAGGGAAGAAGAGTGAGGAATTTATGCATGTGGCATCACGTGACCCGGTCGAATTGTACCGCGAAATGTGTAGTGTGGAAAGGGGTCCAAGGCTGGATAGTACAGAGGTGGAGGTGCTGCTGGAAGTGTGCCATTGGTTTGCCAAATCAGGTTGGGCATCCAATCAGGCCCTTGCCATTTACATTGGTTTGTCATTTTTCCCCACTGCTGCACACAAGTTCCGCAACTTTCTCAAGAAGTGTCCTGCCGATGTTGCCAAGTACTTGGTATATCTTGGGCCAAGCGATGAGGCCGTGAGGTTTTTGTTTCCTATATTTGTTGAATTTTGTTTGGAGAATTTTCCTGACGAGATCAAGAGGTTCAGGGGCATGGTTGAGGCGGCTGACCTCACAAAGCCTCACACTTGGTTTCCATTTGCGCGGGTGATGAAAAGGAAGATAATTTATCACTGTGGGCCGACGAATAGTGGGAAGACTTATAATGCTTTGCAGAGGTTTATGGAGGCAAAGACGGGGATTTATTGTAGTCCGCTTAGGTTGTTGGCGATGGAAGTTTTTGACAAGGTTAATGCGAAGGGGATTTATTGCAGTCTGCTAACCGGACAAGAAAAGAAGCGCGTGCCGTTTTCAAATCATGTTGCTTGCACTGTGGAAATGGCATCAACGCAGGAATTGTATGAAGTGGCTGTTATTGATGAGATTCAGATGATGGCAGATTCGAATAGGGGGTATGCATGGACAAGGGCCCTCCTTGGGTTGACGGCTGATGAGATACATTTGTGCGGTGATCCTAGTGTTTTGGATATTGTCAGGAAGATCTGTCAAGACATGGGAGATGAGTTGTGTGAGCAGCATTATGAGAGGTTCAAACCATTGGTGGTTGAAGCAAAGACCCTGCTTGGAAATCTTGAAAATATTCGATCTGGGGATTGTGTAGTTGCATTTTCTAGGAGAGAGATATTTGAGGTTAAATTAGCCATTGAGAAACAGACTAAACACCGCTGTTGTGTGATATATGGTGCTCTGCCACCCGAAACTCGCAGACAGCAGGCTAGTTTGTTCAACGATCAAAGTAATGAATATGATGTTCTGGTAGCTAGTGATGCAGTGGGAATGGGCCTGAACCTTAACATTAGAAGGGTGATTTTTAATAGCCTTACAAAGTACAATGGTGACAAAATGGTTCCTGTTCCAGCATCACAGGTTAAACAAATTGCAGGAAGAGCTGGTCGGAGAGGATGCCTTTACCCTGATGGACTCGCCACAACCTTGCATTTAGATGATTTGGACTACTTGATTGAGTGTTTGAAACAACCTTTTGATGATGTAAAAAAGGTAGGCCTTTTTCCATCTTATGAGCAGGTTGAATTGTTTTCTGGGCAACTTCCAGATTTGACATTCACCCAGATTTTAGAAAAATTTGGTGAAAATTGCCGTTTGGATGGGTCATACTTCTTGTGTCAACATAATCACATCAAGAAGATTGCTAATATGTTAGAGAAGGTCCAGGGATTATCTCTAGAAGATCGTTTTAACTTCTGTTTTGCTCCTGTTAATGTTAGAGATCCAAAAGCTATGTACCATTTGCTTAGATATGCCACATCATTTGGTCAGAAGCTCCCTGTAAATGTAGCTATGGGGATGCCGAGAAGTTCTGCTCGAAATGATGCAGAACTCCTGGACCTTGAGACTAGGCATCAGGTATTATCCATGTATTTGTGGTTGTCAAACCACTTTGATGAGGAGACGTTTCCATATGTGAAGAAAGTTGAGGCAATGGCTTCATGCATTGCTGACTTACTGGGTCAATCTCTTGTCAAAGCTAATTGGAAACCTGAATCAAGGATTAAAGGGAGACCAAAAACCGAAAAAAGTGAAGGGCAACTAGAAACAAGGAGTGCAGTTGAATTACAAACTGAAAAAACGGAAATGGGCTATTCAAGGACACGATCTCTTTTAAAATTATATGAGAAAAAACGGCATGAAAATTCTTTACTGCTTGATCACTCAAAGAAAGTAGCTGGCTAG

Predicted protein sequences of Glyma13g05330

Limit To All Plant Sequences

>Glyma13g05330.1   sequence type=predicted peptide   gene model=Glyma13g05330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MARGLFHLCTRKRILSKLQALLFINHSQFHTFQNPVSPISTRFSNPLLRPRFSQSSKLPGERFRPTRPFSAAGNEGGATETPEGEFKTDFELGDEVINSVHGFSEHGVVANDESNDCNLEIVDSAECSSSSNNGGGGGGGGSDTNNELGKKSEEFMHVASRDPVELYREMCSVERGPRLDSTEVEVLLEVCHWFAKSGWASNQALAIYIGLSFFPTAAHKFRNFLKKCPADVAKYLVYLGPSDEAVRFLFPIFVEFCLENFPDEIKRFRGMVEAADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKTGIYCSPLRLLAMEVFDKVNAKGIYCSLLTGQEKKRVPFSNHVACTVEMASTQELYEVAVIDEIQMMADSNRGYAWTRALLGLTADEIHLCGDPSVLDIVRKICQDMGDELCEQHYERFKPLVVEAKTLLGNLENIRSGDCVVAFSRREIFEVKLAIEKQTKHRCCVIYGALPPETRRQQASLFNDQSNEYDVLVASDAVGMGLNLNIRRVIFNSLTKYNGDKMVPVPASQVKQIAGRAGRRGCLYPDGLATTLHLDDLDYLIECLKQPFDDVKKVGLFPSYEQVELFSGQLPDLTFTQILEKFGENCRLDGSYFLCQHNHIKKIANMLEKVQGLSLEDRFNFCFAPVNVRDPKAMYHLLRYATSFGQKLPVNVAMGMPRSSARNDAELLDLETRHQVLSMYLWLSNHFDEETFPYVKKVEAMASCIADLLGQSLVKANWKPESRIKGRPKTEKSEGQLETRSAVELQTEKTEMGYSRTRSLLKLYEKKRHENSLLLDHSKKVAG*

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