Glyma13g05280 - SoyBase

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Report for Sequence Feature Glyma13g05280

Feature Type:	gene_model
Chromosome:	Gm13
Start:	5525020
stop:	5527661
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g05280

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G28857	AT	Annotation by Michelle Graham. TAIR10: basic helix-loop-helix (bHLH) DNA-binding family protein \| chr3:10855781-10856313 REVERSE LENGTH=92	SoyBase	E_val: 3.00E-43	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
PTHR12565	Panther	STEROL REGULATORY ELEMENT-BINDING PROTEIN	JGI		ISS
PTHR12565:SF8	Panther	UPSTREAM TRANSCRIPTION FACTOR	JGI		ISS
PF00010	PFAM	Helix-loop-helix DNA-binding domain	JGI		ISS
UniRef100_B9RUP9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription regulator, putative n=1 Tax=Ricinus communis RepID=B9RUP9_RICCO	SoyBase	E_val: 4.00E-45	ISS
UniRef100_UPI0000E649EF	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0000E649EF related cluster n=1 Tax=unknown RepID=UPI0000E649EF	SoyBase	E_val: 3.00E-54	ISS

Expression Patterns of Glyma13g05280

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g05280

Paralog	Evidence	Comments
Glyma19g02510	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g05280 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g063800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g05280

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g05280

Limit To All Plant Sequences

>Glyma13g05280.1   sequence type=CDS   gene model=Glyma13g05280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTAGCAGAAGGTCCAGGCAGCAATCTGCATCCACAAGGATCTCCGATGACCAAATCATCGACCTTGTTTCCAAGTTGCGTCAACTTGTTCCTGAGATTCGCGATAGGCGTTCTGATAAGGTATCAGCATCTAAGGTCCTACAAGAGACCTGTAACTACATCAGAAGCTTACACAGAGAAGTGGATGACCTAAGCGAACGACTGTCTCAGTTGTTGGCCACAATCGATGCTGATAGCCCTGAAGCTGCCATCATTAGGAGCCTAATTAACTAA

Predicted protein sequences of Glyma13g05280

Limit To All Plant Sequences

>Glyma13g05280.1   sequence type=predicted peptide   gene model=Glyma13g05280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSRRSRQQSASTRISDDQIIDLVSKLRQLVPEIRDRRSDKVSASKVLQETCNYIRSLHREVDDLSERLSQLLATIDADSPEAAIIRSLIN*

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