Glyma13g05230 - SoyBase

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Report for Sequence Feature Glyma13g05230

Feature Type:	gene_model
Chromosome:	Gm13
Start:	5450860
stop:	5455406
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g05230

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G39890	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF1637) \| chr5:15974543-15976013 FORWARD LENGTH=276	SoyBase	E_val: 5.00E-118	ISS
GO:0001666	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hypoxia	SoyBase	N/A	ISS
GO:0009862	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0010089	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylem development	SoyBase	N/A	ISS
GO:0010310	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process	SoyBase	N/A	ISS
GO:0044036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall macromolecule metabolic process	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0047800	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cysteamine dioxygenase activity	SoyBase	N/A	ISS
KOG4281	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR22966	Panther	UNCHARACTERIZED	JGI		ISS
PF07847	PFAM	Protein of unknown function (DUF1637)	JGI		ISS
UniRef100_G7KZU7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 2-aminoethanethiol dioxygenase n=1 Tax=Medicago truncatula RepID=G7KZU7_MEDTR	SoyBase	E_val: 2.00E-126	ISS
UniRef100_I1LWJ1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LWJ1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g05230

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g05230

Paralog	Evidence	Comments
Glyma19g02430	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g05230 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g064300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g05230

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g05230

Limit To All Plant Sequences

>Glyma13g05230.1   sequence type=CDS   gene model=Glyma13g05230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGATTGAGAGGACCTTGGCTGATAGAAAAGGAAGAGACTTTTGTGAATTGCCAAGAGAAACCATTGCCAGCAGCAACTCAAGGAGGAACCGGCGGCGGCAGAGGAAGAAGCCGCCGGTTCAGAAGCTTTTCGAGACTTGCAAGGTTGTCTTTGCCTCTGCAGGGACAGGCTTTGTCCCTCCCCATGAGGACATTGACGAGTTGCAGTCTGTTCTAGATGGAATAAAGCCAGAAGATGTTGGTTTAAGACCAGATATGCCGTATTTCAGGACAAGTGCCACTCAGAGAGTGCCAAGAATCACGTACCTGCACATATATGAGTGTGAAAAGTTCTCGATGGGGATATTTTGTTTGCCACCTTCTGGGGTCATTCCTCTTCACAATCACCCTGGAATGACGGTTTTCAGTAAGCTACTTTTTGGCACTATGCACATCAAGTCATATGATTGGGTCGTTGACTTGCCTCCTGAATCTCCTACAACTATCAAACCATCAGAAAATCAAGGTCCTGAGATGAGGTTGGCCAAAGTTAAGGTTGATGCTGATTTCACTGCTCCCTGCAACCCCTCCATCCTTTATCCAGAAGATGGGGGCAACTTGCACTGTTTCACAGCAGTGACAGCATGTGCAGTTCTAGATGTGCTTGGTCCTCCATATTCTGATGCTGAAGGCAGACACTGCACATACTACCACAATTTCCCCTTTTCCAACTTTTCAGCGGATGGATTATCCATACCAGAAGAGGAAAAAAATGCTTATGAATGGCTACAAGAGAGGGAGGAACTTGAAGACTTAGAAGTTAATGGAAAAATGTACAACGGTCCCAAGATTGTTGAGAGCTAA

Predicted protein sequences of Glyma13g05230

Limit To All Plant Sequences

>Glyma13g05230.1   sequence type=predicted peptide   gene model=Glyma13g05230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGIERTLADRKGRDFCELPRETIASSNSRRNRRRQRKKPPVQKLFETCKVVFASAGTGFVPPHEDIDELQSVLDGIKPEDVGLRPDMPYFRTSATQRVPRITYLHIYECEKFSMGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYDWVVDLPPESPTTIKPSENQGPEMRLAKVKVDADFTAPCNPSILYPEDGGNLHCFTAVTACAVLDVLGPPYSDAEGRHCTYYHNFPFSNFSADGLSIPEEEKNAYEWLQEREELEDLEVNGKMYNGPKIVES*

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