Report for Sequence Feature Glyma13g05220
Feature Type: gene_model
Chromosome: Gm13
Start: 5427041
stop: 5433178
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma13g05220
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
KOG0274
KOG
Cdc4 and related F-box and WD-40 proteins
JGI ISS
PTHR22844 Panther
F-BOX AND WD40 DOMAIN PROTEIN
JGI ISS
PF00400 PFAM
WD domain, G-beta repeat
JGI ISS
UniRef100_B9IJU0 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: F-box family protein n=1 Tax=Populus trichocarpa RepID=B9IJU0_POPTR
SoyBase E_val: 0 ISS
UniRef100_I1N631 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N631_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma13g05220
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma13g05220
Paralog Evidence Comments
Glyma19g02420 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma13g05220 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.13g064500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma13g05220
Coding sequences of Glyma13g05220
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g05220.4 sequence type=CDS gene model=Glyma13g05220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCCGAGCAATCCCGGTCGCCGGCGACACCGGCAACGACGATAACCGACCTAAACGAAGACTGCATAGCTCACTGCGCCGGCCATCTGAGTCTCGGCGACGTTTGCAATATGGCGATGACTTCCTCCGCACTCAAACGCCTCGCCTATTCCGATTTCATTTGGCAACGCTTCTTCAGGGAGCACTGGCATCTAGAGTTACCTTGGCATTCGAGTGGAAACGGAGGAGGAGGAGGAGCGAGGGGAGTGTATATGGTCAGACACGCGGCGTTGCGACAGTTCAAGTTTGTCGACCCTTTCGTTCTCGACTTTGATGCACACGCTAAGCCTTTCGACCAGTTGCTCCTCCACAAAAATCACCTTTTCTACTCACAGGGTTCACGTGTGGAAGTGATAGATTTGGATGGCTGTCTAAAGAGAACAACAACAGATTTTTTCCATTCGTTATGTTATCATAAAGCAAGAATCACTTGTATGAGGTTGTTTCCACTTAATGAAATGACTTCAGTATTTCGAGGCGATACACAAGGGGAGCAAAATGTTTTAGTTACCTCCAGCTGTGATCACTCCATTCGTCTTTGGTGGAAGGGTTCAAGCCTGCGGTGCTTTAGAGGTCACAATGGTCCTGTGTTGTCCCTATCAAATAAATTATTGGGAGAGGATGGCAGCAAAGTATTGGCAAGTGGAGGAGAAGATGGTACTGTTCGACTATGGTCCCTTGGCTCAAGTGGCAAACGAGGACAGCGTGCTTTGAAGGCTACATTCTATGGGCATGAAAAACCTGTAAATTTGATGTCAGTTGCCGGGCACAAAACTTCGCTTTTGGTGACCATCTCTAGAGATTCTAAGGTAAGGGTTTGGGATACTGGCACTGCTACATCATCTGCTGTTCGTACCTCCTGTTGCGTTGGGATGGCTTCTGTTCCTGGTACACCCCTAAACATGAAATGCCATGAATCACTATTGTATGTGGCTGCTGGTTCCTCTGTTGCTGCATTTGATTTAAGGACAATGCAGAAAGTTATCACCGCAGCTGTACATCAACCAAAGCTGTGTTCCTTTGATGCTGTCCCTTCAAAGTATTTAATATGCACAGGCGGTAATGGCAGGGCAATGCTCTGGGATGTTAGGAGAAATCAAGAATCATTAAAACCAGAACCGATAGCCGAGTTGGATGGACATTGTGGCCAAGTAACTTTACTGCACATGGATCCATACAAAATAGTTACTGGCGGCCCTGACAATGCTTATGTGAATGTATGGGAAGTTGACACTGGTGTACAAACAAATTCCCTGCTTTGCTCTTCAACTGATGATGCTGGATCTGGCTGTGATGCCATGACTGTAGATGGTTGTAGAATTACTACTGCTAGCTATTATGAAGATTTGGGTGTTCTGCGTTTTAGGGACTTCAACCATGCAACAAATCCTGTAACGAAACTAGAAAATGAACCGTCATCAAAATTTTGGATTTCTATGTCTGATGATGACAGGGATGACTGA
Predicted protein sequences of Glyma13g05220
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma13g05220.4 sequence type=predicted peptide gene model=Glyma13g05220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAEQSRSPATPATTITDLNEDCIAHCAGHLSLGDVCNMAMTSSALKRLAYSDFIWQRFFREHWHLELPWHSSGNGGGGGARGVYMVRHAALRQFKFVDPFVLDFDAHAKPFDQLLLHKNHLFYSQGSRVEVIDLDGCLKRTTTDFFHSLCYHKARITCMRLFPLNEMTSVFRGDTQGEQNVLVTSSCDHSIRLWWKGSSLRCFRGHNGPVLSLSNKLLGEDGSKVLASGGEDGTVRLWSLGSSGKRGQRALKATFYGHEKPVNLMSVAGHKTSLLVTISRDSKVRVWDTGTATSSAVRTSCCVGMASVPGTPLNMKCHESLLYVAAGSSVAAFDLRTMQKVITAAVHQPKLCSFDAVPSKYLICTGGNGRAMLWDVRRNQESLKPEPIAELDGHCGQVTLLHMDPYKIVTGGPDNAYVNVWEVDTGVQTNSLLCSSTDDAGSGCDAMTVDGCRITTASYYEDLGVLRFRDFNHATNPVTKLENEPSSKFWISMSDDDRDD*