Glyma13g05180 - SoyBase

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Report for Sequence Feature Glyma13g05180

Feature Type:	gene_model
Chromosome:	Gm13
Start:	5415365
stop:	5417496
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g05180

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G28720	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G58100.1); Has 1610 Blast hits to 344 proteins in 85 species: Archae - 0; Bacteria - 567; Metazoa - 95; Fungi - 71; Plants - 145; Viruses - 0; Other Eukaryotes - 732 (source: NCBI BLink). \| chr3:10782276-10784339 FORWARD	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_F4PTY3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ribose-phosphate pyrophosphokinase n=1 Tax=Dictyostelium fasciculatum (strain SH3) (Slime mold) RepID=F4PTY3_DICFS	SoyBase	E_val: 6.00E-34	ISS
UniRef100_I1LWI7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1LWI7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g05180

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g05180

Paralog	Evidence	Comments
Glyma19g02400	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g05180 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g064600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g05180

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g05180

Limit To All Plant Sequences

>Glyma13g05180.2   sequence type=CDS   gene model=Glyma13g05180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGTCTTCCTCCGCCACCACCACCACCACCCTCCCGGTGTTGGCGTTTCTCCTCCTCACGACCACCGCGATCACCGCCGCGCCGATTATCGGTCTAGACTCATTCTTGAGCCACCAATCCCGAATGGACCCTCACGCCTCGAACGACTCCTTCCTCTCTCTCCCTTCCTCCGTCAAAAAACCCCTCTCCCACTCCTCCGACTTCTCCCTCTCTCTCTCTCTCCCAATCTCCCTCTCCCTCCACCTCCTCGGCGACTTCCCCTCCGACACCCCCTCCCTCCTCTCCGCCTTCCTCTCCGCCGCCAGCCCCACCCACTTCCACTGCTCCGGGACGTTCTTCACCTCCTCCCACCGCTTCTTCTGGATCGACCTCCGCGCCGGCCCCGTCGACTACGGTCCCTCGATCTCCGGCGACGGCGTCATCCCCCGCGGCGAGTTCCACCCCCTCGCCGCGCTCCACGGCCGTCCGAAATCCAACAAGGCCTTCGCCGCCGACCTCGCCTCTCTCGTCTGGAGCGCCTACCACGTCTTCCTCGCCCCCTCCCTCCGGATCCCCGTGCCCTTCGAGAATTCACTCGTGATTCAGTTCGTCCACGTGCACAGCGAGAACGAGAAGGATTTGGCCGGTTTGGATTGGAAATCGATCGAGAAGAGCTTCAGGTTTGAGGGTAAGAGCAATGGATTGCTTTTAGGGGATCAGAGTTTGAGCTTTAGGAAGTATGAGATTAGGTATTCAGAGTGCTCGATTTGCTCGTTCGCGATCTCGCGGTCGATTAATTCGTATACGTCTAGGTTTCTGTTTGATAATTATACCTTGATTGTGAGTGAGTATTTGGATTCGAAGCGATTACACCAGATTTTGTCTGATTCCGGCGATGAGTTGAGAAAGCTGGCTGGTGTTCCGGAGGAGGACTTTGGCAGGGTTGTTCCTGTGTATGTTTTTGACTTGGATTACACTTCGTTGTTGTTGCTTGATCGGTATCATCAGTCAGTGGCGTTTAAGGATATGGTGATTGCGGTTAGGACGAGGAACACGCAGACTGTGAGTGATTATAGTTGCAATGGTAGGCATGTGTTCATGCAGACGAGGCAACTTGAGCGGCCGATTGTTGGGTCGATTCTTCAGAGTATGTGGGGGGTGTCTCCAACACATTTGAATTGGAGCCCTCAACACAATGAGACTTTGGTGGATTATACGTGGAGTATGGGGCAGACGCCATTCGGGCCGTTTTCTGAGATGCTGAGTTTGTCCTTTGTGCAGAAGGATGCTGCCAGGAGGAATGTTCTGAGTGTTGAGACGCATGGCGGGGCCAAGAGTCTGCTCAAGCAGAAGCAGCATGTGGAGTTTGTGCAGAGATGGAACCTTTTCAAGTACAAGCTGAACAAGGCCGTGTCTGCATTGTCACATTTGGATTTTGACATGGCGTTGTTTTACTTGAGGTCCTCTGATCACGATCTGTATGCCATTCACTCCATTGTTTATCACGCCTCGCAGGAAATTGAGGCGTCCCTTGTGTGCTTTAGGGACCCTCCATTTCCCTGGGGTTCGGTCTCTATTTCTGTATCAGCTTTCCTTGCTGTCTCTTATATTTATGCAAGACGAGACAAGCTTTTTAGAAACAAAAGGAAGCAATTTTGA

Predicted protein sequences of Glyma13g05180

Limit To All Plant Sequences

>Glyma13g05180.2   sequence type=predicted peptide   gene model=Glyma13g05180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSSSATTTTTLPVLAFLLLTTTAITAAPIIGLDSFLSHQSRMDPHASNDSFLSLPSSVKKPLSHSSDFSLSLSLPISLSLHLLGDFPSDTPSLLSAFLSAASPTHFHCSGTFFTSSHRFFWIDLRAGPVDYGPSISGDGVIPRGEFHPLAALHGRPKSNKAFAADLASLVWSAYHVFLAPSLRIPVPFENSLVIQFVHVHSENEKDLAGLDWKSIEKSFRFEGKSNGLLLGDQSLSFRKYEIRYSECSICSFAISRSINSYTSRFLFDNYTLIVSEYLDSKRLHQILSDSGDELRKLAGVPEEDFGRVVPVYVFDLDYTSLLLLDRYHQSVAFKDMVIAVRTRNTQTVSDYSCNGRHVFMQTRQLERPIVGSILQSMWGVSPTHLNWSPQHNETLVDYTWSMGQTPFGPFSEMLSLSFVQKDAARRNVLSVETHGGAKSLLKQKQHVEFVQRWNLFKYKLNKAVSALSHLDFDMALFYLRSSDHDLYAIHSIVYHASQEIEASLVCFRDPPFPWGSVSISVSAFLAVSYIYARRDKLFRNKRKQF*

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