Glyma13g05080 - SoyBase

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Report for Sequence Feature Glyma13g05080

Feature Type:	gene_model
Chromosome:	Gm13
Start:	5356187
stop:	5363510
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g05080

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G62670	AT	Annotation by Michelle Graham. TAIR10: H(+)-ATPase 11 \| chr5:25159495-25164957 FORWARD LENGTH=956	SoyBase	E_val: 0	ISS
GO:0006200	GO-bp	Annotation by Michelle Graham. GO Biological Process: ATP catabolic process	SoyBase	N/A	ISS
GO:0006754	GO-bp	Annotation by Michelle Graham. GO Biological Process: ATP biosynthetic process	SoyBase	N/A	ISS
GO:0006812	GO-bp	Annotation by Michelle Graham. GO Biological Process: cation transport	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0015662	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	SoyBase	N/A	ISS
GO:0016887	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATPase activity	SoyBase	N/A	ISS
GO:0046872	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metal ion binding	SoyBase	N/A	ISS
KOG0205	KOG	Plasma membrane H+-transporting ATPase	JGI		ISS
PTHR24093	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24093:SF61	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00122	PFAM	E1-E2 ATPase	JGI		ISS
PF00702	PFAM	haloacid dehalogenase-like hydrolase	JGI		ISS
UniRef100_I1LWI1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LWI1_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9AVP6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: P-type H+-ATPase n=2 Tax=Fabeae RepID=Q9AVP6_VICFA	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g05080

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g05080

Paralog	Evidence	Comments
Glyma19g02270	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g05080 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g065400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g05080

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g05080

Limit To All Plant Sequences

>Glyma13g05080.1   sequence type=CDS   gene model=Glyma13g05080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGAATCCTCTTTCATGGGTCATGGAAGCTGCAGCAATCATGGCCATTGCTTTGGCCAATGGAGGAGGAAAACCTCCTGATTGGCAAGACTTTGTTGGGATTATCACACTCCTTATTATCAATTCAACAATAAGTTTCATTGAGGAGAACAATGCTGGTAATGCTGCGGCAGCTCTGATGGCTCGTTTAGCACCTAAAGCTAAGTTCCTTCGAGATGGGAAATGGATTGAGGAGGATGCTAGCATTCTTGTTCCTGGTGATATAATTAGTGTTAAGCTAGGGGATATTATCCCTGCGGATGCTCGTCTACTTGAAGGTGATCCACTGAAGATTGATCAGTCTGCACTTACAGGCGAGTCTCTTCCTGTCACAAAAGGCCCTGGTGATAGTGTTTATTCAGGCTCCACATGCAAGCAGGGAGAGATCAATGCAGTTGTTATTGCCACAGGAGTTCATACCTTCTTTGGCAAAGCTGCTCATCTTGTGGACTCCACAAATCAAGTTGGTCATTTCCAGAAGGTCCTGACTGCAATTGGGAACTTCTGCATATGTTCCATTGCTGTGGGAATGATAGTAGAGATAATTGTCATGTACCCAATTCAACACCGGGAATATCGTCCTGGGATTGACAATCTGCTTGTGCTTCTTATTGGAGGAATTCCTATTGCCATGCCTACTGTTTTGTCAGTGACAATGGCAATTGGATCCCATCGCTTAGCTCAGCAGGGTGCTATTACTAAAAGAATGACAGCAATAGAAGAGATGGCAGGAATGGATGTATTATGTAGTGACAAAACTGGAACTTTGACTTTGAATAAACTGACAGTTGACAAGAATCTTATTGAGATTTTTGCTAAAGGAGTTGACGTAGATACTGTTGTTCTCATGGCCGCTCGGGCTGCACGATTGGAAAACCAAGATGCTATAGATGCCGCTATTGTAGGGATGTTGGGTGATCCAAAAGAGGCAAGGGCTGGTATTCAAGAGGTTCACTTCCTACCCTTCAATCCAACTGACAAGCGAACTGCAATCACTTATATAGACGGTGAAAGTAAAATGCATCGTGTCAGCAAAGGAGCACCAGAGCAGATTTTGAATCTTGCACGCAATAAATCAGAGATAGAACGCAGAGTTCATTCTGTCATTGATAAGTTTGCAGAGCGAGGATTACGGTCTCTTGCAGTAGCTTACCAGGAAGTTCCTGATGGAAAGAAAGAAAGCCAAGGTGGGCCTTGGCAATTTATTGGACTCTTGCCTCTATTTGACCCACCTAGACATGATAGCGCTGAGACAATACGAAGGGCATTAAATCTTGGAGTAAATGTTAAAATGATAACAGGTGATCAACTAGCAATAGGAAAAGAAACAGGACGCCGTCTGGGGATGGGAACCAACATGTACCCTTCATCGGCTTTATTGGGCCAAAACAAGGATGAAGCAATTGCTACCTTGCCAGTTGATGAGTTGATTGAAAAAGCAGATGGATTTGCTGGTGTTTTTCCTGAACACAAATATGAGATCGTGAAACGTTTACAAGCTAGGAAACACATATGTGGAATGACTGGTGATGGGGTTAACGATGCTCCTGCTCTTAAAAAGGCAGATATTGGAATAGCTGTCGCCGATGCTACTGATGCAGCTCGTAGTGCTTCTGATATTGTTCTGACTGAACCTGGTCTCAGTGTTATCATCAGTGCTGTACTGACCAGTCGAGCAATATTCCAAAGGATGAAGAATTACACAATCTATGCAGTTTCCATCACAATCCGTATTGTGCTTGGTTTCATGTTACTGGCCCTCATATGGCATTTTGATTTTCCACCATTCATGGTGCTGATTATTGCTATTCTTAATGACGGTACCATTATGACGATATCAAAGGACAGGGTGAAACCATCTCCATATCCAGATAGCTGGAAGTTGGCCGAGATCTTTACCACTGGAATAATTCTTGGTGGTTATTTGGCTATGATGACAGTTATTTTCTTTTGGGCAGCATATAAAACAGATTTTTTCCCTCAAACATTTGGAGTCTCAAGTCTTCAGAAAAAGGATAGGGATGACTTTAGAAAGCTTGCCTCAGCAATATACCTACAAGTTAGCACAATTAGTCAGGCCCTCATATTCATTACACGGGCTCGGAGTTGGTCTTATGTTGAACGTCCGGGTTTGTTACTTGTTGCAGCTTTTGTTATCGCCCAGCTGATAGCTACCTTAATTGCAGTTTATGCAAATTGGAGTTTCGCTGCTATTGAAGGGATTGGATGGGGTTGGGCTGGTGTTGTTTGGCTTTACAACCTCATCTTTTATATCCCACTTGACTTTATCAAGTTCATAATTCGATATGCCTTGAGTGGAAGGGCTTGGGATCTTGTTATTGAACAAAGGATTGCTTTTACAAGGAAAAAAGATTTTGGAAAGGAAGAACGTGAACTTAAATGGGCACATGCACAGAGGACGCTTCACGGCCTTCACCCACCAGAGACTAAGATGTTCAATGAACGTACAAGTTACACAGAACTTAATCAGATGGCTGAAGAGGCTAGAAGACGAGCAGAAATTGCAAGGCTGAGAGAACTGCATACACTTAAGGGTCGTGTTGAGTCTGTGGTTAGACTGAAGGGTCTTAACATTGACACAATACAGCAAGCATACACTGTCTAG

Predicted protein sequences of Glyma13g05080

Limit To All Plant Sequences

>Glyma13g05080.1   sequence type=predicted peptide   gene model=Glyma13g05080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIITLLIINSTISFIEENNAGNAAAALMARLAPKAKFLRDGKWIEEDASILVPGDIISVKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKGPGDSVYSGSTCKQGEINAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGMIVEIIVMYPIQHREYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLAQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLIEIFAKGVDVDTVVLMAARAARLENQDAIDAAIVGMLGDPKEARAGIQEVHFLPFNPTDKRTAITYIDGESKMHRVSKGAPEQILNLARNKSEIERRVHSVIDKFAERGLRSLAVAYQEVPDGKKESQGGPWQFIGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQNKDEAIATLPVDELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWHFDFPPFMVLIIAILNDGTIMTISKDRVKPSPYPDSWKLAEIFTTGIILGGYLAMMTVIFFWAAYKTDFFPQTFGVSSLQKKDRDDFRKLASAIYLQVSTISQALIFITRARSWSYVERPGLLLVAAFVIAQLIATLIAVYANWSFAAIEGIGWGWAGVVWLYNLIFYIPLDFIKFIIRYALSGRAWDLVIEQRIAFTRKKDFGKEERELKWAHAQRTLHGLHPPETKMFNERTSYTELNQMAEEARRRAEIARLRELHTLKGRVESVVRLKGLNIDTIQQAYTV*

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