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Report for Sequence Feature Glyma13g05056

Feature Type:gene_model
Chromosome:Gm13
Start:5276864
stop:5282208
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g05056
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G52340AT Annotation by Michelle Graham. TAIR10: exocyst subunit exo70 family protein A2 | chr5:21250802-21253939 FORWARD LENGTH=631 SoyBaseE_val: 2.00E-77ISS
GO:0006887GO-bp Annotation by Michelle Graham. GO Biological Process: exocytosis SoyBaseN/AISS
GO:0006904GO-bp Annotation by Michelle Graham. GO Biological Process: vesicle docking involved in exocytosis SoyBaseN/AISS
GO:0000145GO-cc Annotation by Michelle Graham. GO Cellular Compartment: exocyst SoyBaseN/AISS
PTHR12542Panther EXOCYST COMPLEX PROTEIN EXO70-RELATED JGI ISS
PTHR12542:SF7Panther EXOCYST COMPLEX PROTEIN EXO70 JGI ISS
UniRef100_B9T2S4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9T2S4_RICCO SoyBaseE_val: 3.00E-79ISS
UniRef100_I1LWH8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LWH8_SOYBN SoyBaseE_val: 2.00E-101ISS

Expression Patterns of Glyma13g05056
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g05056 not represented in the dataset
Glyma13g05056 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g05056 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g065600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g05056
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g05056
>Glyma13g05056.1   sequence type=CDS   gene model=Glyma13g05056   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGATATCGCAAGCCATGGACGCTCTTCGACAAAGAGCAGTGTTTGTGAAAGAGTCACTTCACAAGAGTCAGACCATCACTGATAACATGGTTTCCATTCTCGGTTCCTTTGATCATCGCCTCTCCGCACTCGAAACTGCCATGCGTCCCACTCAGATAAAAACACATTCAATTCGTAGCGCACATGATAATATTGACAAGACTCTAAAAGCAGCAGAGGGGATTTTGTCTCAATTCGATCAAACACGAATGGCCGAGGCTAAAATACTACGAGGGCCACATGAAGATCTAGAAAGCTATTTAGAAGCAATTGATCAGTTGAGAGCAAATGTTCGTTTCTTTAGTAGTAACAAAAGTTTCAAAAGTAGCGAAGGAATCATCAACCATGCGAACAACTTGCTTGCCAAAGCTATGACAAAGCTTGAAGAGGAATTCAAACATCTTTTAACAAATTACAGGATCCACCAAGCTTATGAAATATGA
Predicted protein sequences of Glyma13g05056
>Glyma13g05056.1   sequence type=predicted peptide   gene model=Glyma13g05056   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGISQAMDALRQRAVFVKESLHKSQTITDNMVSILGSFDHRLSALETAMRPTQIKTHSIRSAHDNIDKTLKAAEGILSQFDQTRMAEAKILRGPHEDLESYLEAIDQLRANVRFFSSNKSFKSSEGIINHANNLLAKAMTKLEEEFKHLLTNYRIHQAYEI*






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