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Report for Sequence Feature Glyma13g04981

Feature Type:gene_model
Chromosome:Gm13
Start:5210751
stop:5211932
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g04981
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G40010AT Annotation by Michelle Graham. TAIR10: AAA-ATPase 1 | chr5:16020218-16021762 REVERSE LENGTH=514 SoyBaseE_val: 5.00E-103ISS
GO:0001666GO-bp Annotation by Michelle Graham. GO Biological Process: response to hypoxia SoyBaseN/AISS
GO:0009862GO-bp Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway SoyBaseN/AISS
GO:0010154GO-bp Annotation by Michelle Graham. GO Biological Process: fruit development SoyBaseN/AISS
GO:0010310GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process SoyBaseN/AISS
GO:0010431GO-bp Annotation by Michelle Graham. GO Biological Process: seed maturation SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005783GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016887GO-mf Annotation by Michelle Graham. GO Molecular Function: ATPase activity SoyBaseN/AISS
GO:0017111GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity SoyBaseN/AISS
KOG0743 KOG AAA+-type ATPase JGI ISS
PTHR23070Panther BCS1 AAA-TYPE ATPASE JGI ISS
PTHR23070:SF1Panther AAA-TYPE ATPASE-RELATED JGI ISS
PF00004PFAM ATPase family associated with various cellular activities (AAA) JGI ISS
UniRef100_G7KK18UniRef Annotation by Michelle Graham. Best UniRef hit: Mitochondrial chaperone BCS1 n=1 Tax=Medicago truncatula RepID=G7KK18_MEDTR SoyBaseE_val: 2.00E-115ISS
UniRef100_G7KK18UniRef Annotation by Michelle Graham. Most informative UniRef hit: Mitochondrial chaperone BCS1 n=1 Tax=Medicago truncatula RepID=G7KK18_MEDTR SoyBaseE_val: 2.00E-115ISS

Expression Patterns of Glyma13g04981
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g04981 not represented in the dataset
Glyma13g04981 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g04981 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g066300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g04981
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g04981
>Glyma13g04981.1   sequence type=CDS   gene model=Glyma13g04981   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATTCATTGATCACAACAAAAGAAAGAAAGAAATATGGTCTCACCCTGGCTCACTTAATGTTTGTGTATGCAATGTATGAGCAATTCTTCGCATACCATCTTCGTACCTATGTCAAAAAATACATACAAAAATTCATAGGCCTTATATACAAATTTCCTTCCGAGTTTTCAGGGGAACGCCTCAAGAGCACCAACAGGCTCAAAGCTGAGGTGTTGAAGGATAGTCAGATACCACTAGTCCTCAGCATGAACGACAACCAAGAGATCATAGATGAGTTCCAAGGAGTCAAAGTGTGGTGGAGTGCAAATTACAAACTTCCAAGAACACAATCAATTTCATGGCACAGCAACTCGGAAGAAGAGAGGCTCTTACATCCAACATGTGACACTCAAGCTGTACACCAACAATTCCATCAAAGCCATGTGAATTTTGAGCACCCTTTGAAGTTTGAGACCCTCGCGATGGACCCTAAGAAGAAGGAGGAGATCCTAAACGACCTTGTTAAGTTCAAGACAGGTGGAGAGTACTATGCTGAAGTTGGGAAGGCTTGGAAGAGAGGGTACTTGCTATATGACCCTCCAGGGACTGGGAAGTCCAGCATGATAGCTGCAATGGCTAATTTCATGAACTATGATATGTATCATCTTGAACTCACTGCAGTGAAGAAAAACACTGAGCTGAGGAAGCTGAAGAAAAAAGAAAATGAGGATGAGGAGCAACCAGAGAATCCTATTATGAATGCTGAAGAAGAAGAGAAGGCAAGCAAGGTGACTCTATCAGGGTTGTTGAACTTTACTGATGGGAGTTGGTCAGTGTGCGGGGGAGAGAGGATCGTAATTTTCACAACAAATTTAGTGGAGAAGCTTGATCCTGCTCTCATCAGGAGAGGGAGGATGGACAAGCACATAGAGATGTCATACTGCGGCTATGAGGCTTTCAAGGTGCTAACCAAGAACTACTTGAGAAGTTGTTACTGCTGA
Predicted protein sequences of Glyma13g04981
>Glyma13g04981.1   sequence type=predicted peptide   gene model=Glyma13g04981   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNSLITTKERKKYGLTLAHLMFVYAMYEQFFAYHLRTYVKKYIQKFIGLIYKFPSEFSGERLKSTNRLKAEVLKDSQIPLVLSMNDNQEIIDEFQGVKVWWSANYKLPRTQSISWHSNSEEERLLHPTCDTQAVHQQFHQSHVNFEHPLKFETLAMDPKKKEEILNDLVKFKTGGEYYAEVGKAWKRGYLLYDPPGTGKSSMIAAMANFMNYDMYHLELTAVKKNTELRKLKKKENEDEEQPENPIMNAEEEEKASKVTLSGLLNFTDGSWSVCGGERIVIFTTNLVEKLDPALIRRGRMDKHIEMSYCGYEAFKVLTKNYLRSCYC*






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