Report for Sequence Feature Glyma13g04910
Feature Type: gene_model
Chromosome: Gm13
Start: 5180320
stop: 5184802
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma13g04910
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G59650 AT
Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF1336) | chr1:21920099-21922670 FORWARD LENGTH=492
SoyBase E_val: 5.00E-160 ISS
GO:0006499 GO-bp
Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PF07059 PFAM
Protein of unknown function (DUF1336)
JGI ISS
UniRef100_I1LWH1 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LWH1_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q9SLT5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: CW14 protein n=1 Tax=Arabidopsis thaliana RepID=Q9SLT5_ARATH
SoyBase E_val: 2.00E-157 ISS
Expression Patterns of Glyma13g04910
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma13g04910
Paralog Evidence Comments
Glyma19g02080 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma13g04910 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.13g066800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma13g04910
Coding sequences of Glyma13g04910
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g04910.2 sequence type=CDS gene model=Glyma13g04910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGACGAAAACACGAAATGACCCTCCACCAGCTCAACGAACGAACGATGCTGCTGCTGCTTTGGTAATTGCATTTGCTGGTGAGGTGACTCATCTCTCTCTCTCTCTCATCTCTCCCTCTCTCTCATCTCTCCCTTCCAAAAAAAAGCACCAATTTTTTCGAACGCCAACGCGAATCACGAAGAGGGTCACCGAGAAAATGGGTGTTTGTGGGTCGAGGCCCAAAGTGAACGAGGACCTCTCAGCGAAGAAGAAGAACAACCACCACCGAAGAAGAAGAAGGAGAATCCTCAGAAGACGCGTCTCTTCTAGAAAGATCGAAGCTAACAACGTTTCTCACTGTAATTCAGCTCTTCAAGCTTCTAATCGCGCTTCTGATGCTGCTTGGTTTGATTCTACTTCGGCATTGGATTCTGAGTGTGATGACGAATTTTACAGTGTCTATGATGATGGGATGTCTTTGAATGAGTATGAAATTGGGTCAAGGCCAAACGATTCATCTCCTAAAGGAGTTGATTCTGTGTTTGTTGATCACCAACAACAGAAACAAAGAGTGCACCCTTATAATTATTTTCGTAGCAATTCTTCTTTGAAGGTTGCCAAGAATCAAGGCAAACCAAAAGATTCTACATTGAAATCAGATGGCTCTAGAGTTGAGTTAGACTCTGTTTCGACAGGAGAAGTGTCTACAGGTCAAGCAGATGAAATTGGAGAGTACAGAAAGCTGTCCCTGGACCATTGTGGGATTCTGCCAAATACCTGTTTGCCTTGCCTCACTTCCAATGCACTTGCTGTTGAAAAAAGAAGGCCAATGAGTCCTGATACACCTAGTTCGCGGAGAAAGTCGCTTTCTAAACTCTCCTTCAAATGGAGAGAAGGGTCTTCAGATATGACTTTACTTTCCCCTAAGGCATTTAAACAAAAACATTTGGCAGGTTCATCGATTCCATTTTGTCCAATAGAGAAGCAAACCCCTGGTTCTTGGTCACAAATTGAGCCAAGTTCCTTCAGAGTCAGAGGCAAAAACTACTTTAGGGATAAGAAGAAAGATTTTGCTCCGGGCAGTGCTGCTTTTTATCCTCTTGGTGCTGACCTCTTTTTGTCTTCTCGAAAAATTGATCATATTGCTCGCTTTATACAAATTCCTTCAATAAACGTACCTGGGGACGTCCCTTCTATTCTTATTGTAAATATTCAGATACCATTGTATCCTGCCACTATCTTCCAAAGTGAAAATGATGGTGAAGGAATGAATGTGGTTTTGTACTTTAAATTATCTGAAAAATACTCTAAAGACCTTCCAGACCAATTCCGGGAAAGCATTAGTAAATTGATCAATGACGAAGTGGAGAGAGTTAAAGGCTTCCCTCTAGATACAATTGCACCCTTTAGGGAGAGATTAAAAATTTTAGGCAGAGTGGCAAATTTGGAGAATTTATCTTTAAGCACAACTGAAAAGAAGCTTATGAATGCTTACAACGAAAAGCCAGTTCTCTCACGTCCTCAGCATGAATTTTTCTTGGGAGAAAACTACCTTGAGATAGATTTGGATGTACACAGATTTAGCTATATTGCAAGAAAGGGATTTGAAGGCTTCATTGAAAGACTGAAGCTATGTAACCTGGATTTTGGTCTGACAATTCAGGGAAACAAGGCCGAAGACTTGCCAGAGCATTTATTATGTGCAATACGGTTGAATAAACTTGACTACAGCAACTTCAACCAGTTTGGCTTTTAA
Predicted protein sequences of Glyma13g04910
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma13g04910.2 sequence type=predicted peptide gene model=Glyma13g04910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MTKTRNDPPPAQRTNDAAAALVIAFAGEVTHLSLSLISPSLSSLPSKKKHQFFRTPTRITKRVTEKMGVCGSRPKVNEDLSAKKKNNHHRRRRRRILRRRVSSRKIEANNVSHCNSALQASNRASDAAWFDSTSALDSECDDEFYSVYDDGMSLNEYEIGSRPNDSSPKGVDSVFVDHQQQKQRVHPYNYFRSNSSLKVAKNQGKPKDSTLKSDGSRVELDSVSTGEVSTGQADEIGEYRKLSLDHCGILPNTCLPCLTSNALAVEKRRPMSPDTPSSRRKSLSKLSFKWREGSSDMTLLSPKAFKQKHLAGSSIPFCPIEKQTPGSWSQIEPSSFRVRGKNYFRDKKKDFAPGSAAFYPLGADLFLSSRKIDHIARFIQIPSINVPGDVPSILIVNIQIPLYPATIFQSENDGEGMNVVLYFKLSEKYSKDLPDQFRESISKLINDEVERVKGFPLDTIAPFRERLKILGRVANLENLSLSTTEKKLMNAYNEKPVLSRPQHEFFLGENYLEIDLDVHRFSYIARKGFEGFIERLKLCNLDFGLTIQGNKAEDLPEHLLCAIRLNKLDYSNFNQFGF*