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Report for Sequence Feature Glyma13g04881

Feature Type:gene_model
Chromosome:Gm13
Start:5141869
stop:5142857
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g04881
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G28450AT Annotation by Michelle Graham. TAIR10: Leucine-rich repeat protein kinase family protein | chr3:10667359-10669176 FORWARD LENGTH=605 SoyBaseE_val: 2.00E-65ISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0007169GO-bp Annotation by Michelle Graham. GO Biological Process: transmembrane receptor protein tyrosine kinase signaling pathway SoyBaseN/AISS
GO:0030968GO-bp Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
PTHR24420Panther FAMILY NOT NAMED JGI ISS
PTHR24420:SF477Panther SUBFAMILY NOT NAMED JGI ISS
PF00560PFAM Leucine Rich Repeat JGI ISS
UniRef100_G7KK02UniRef Annotation by Michelle Graham. Most informative UniRef hit: LRR receptor-like serine/threonine-protein kinase FEI n=1 Tax=Medicago truncatula RepID=G7KK02_MEDTR SoyBaseE_val: 7.00E-80ISS
UniRef100_I1N605UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N605_SOYBN SoyBaseE_val: 5.00E-100ISS

Expression Patterns of Glyma13g04881
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g04881 not represented in the dataset
Glyma13g04881 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g04881 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g067200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g04881
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g04881
>Glyma13g04881.1   sequence type=CDS   gene model=Glyma13g04881   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATCCTAGGAGCAGCTTGTGTTCTTCTCTGTTCATGTTCATCACCTTGTTGGGGCTTCATGTGTACTTCGCTTCGTCGCAGGTCGAAGACTACGTGAGATGTCTACGGGGCATCGAGGACACTGTCTCCGACCCTCAGGCTCGGCTCGCCACGTGGAGGTTCGACAACACAACCTCCGGTTTCATCTGCGACTTCGAGGGCGTGTCATGCTGGGGCCGAAGGGAGAACCGTGTCTTAGGTTTGGACCTCCGAGATACGAAGCTTTCGGGTAATAAGATCCCTGAGGCTTTGAAGTACTGTGGAAAGAGCATTCAAAGGTTGGATCTTGCTTCAGATTCTTTTACTTCGAAGATCCCACGTGAGATATGCACTTGGATGCCGTTTTTGGTTTCAATAGATTTGTCAAGTAACAAACTTTCTGGGCATATTCCCCCTACGATTGTGAACTGTTCTTATTTGAATGAGTTGGTGTTGTCAAATAACCAGCTTTCTGGCTCAATTCCCTCTGAGTTTGGGAGTTTAAACAGGCTTAAGAAGTTTTCTGTGGCTAATAATAGGCTTAGTGGGACAATTCCTGAGATTTTCAATGGGTTTGACAGGGAGGGTTTTGAGGGGAATAGTAAGAAGAATGATATTATTATTGTTGCTGCTGGGGGGTGGCTGGTGTGGGAAGCGGCATGGGAAGGAGTAATAAATTTGTAA
Predicted protein sequences of Glyma13g04881
>Glyma13g04881.1   sequence type=predicted peptide   gene model=Glyma13g04881   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNPRSSLCSSLFMFITLLGLHVYFASSQVEDYVRCLRGIEDTVSDPQARLATWRFDNTTSGFICDFEGVSCWGRRENRVLGLDLRDTKLSGNKIPEALKYCGKSIQRLDLASDSFTSKIPREICTWMPFLVSIDLSSNKLSGHIPPTIVNCSYLNELVLSNNQLSGSIPSEFGSLNRLKKFSVANNRLSGTIPEIFNGFDREGFEGNSKKNDIIIVAAGGWLVWEAAWEGVINL*






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