Glyma13g04871 - SoyBase

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Report for Sequence Feature Glyma13g04871

Feature Type:	gene_model
Chromosome:	Gm13
Start:	5130729
stop:	5135785
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g04871

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G74860	AT	Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19010.1); Has 210 Blast hits to 193 proteins in 61 species: Archae - 0; Bacteria - 9; Metazoa - 75; Fungi - 18; Plants - 58; Viruses - 1; Other Eukaryotes - 49 (source: NCBI BLink). \| chr1:28123432-28125600 FORWARD LENGTH=400	SoyBase	E_val: 7.00E-32	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_Q9LMC6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F14D16.16 n=1 Tax=Arabidopsis thaliana RepID=Q9LMC6_ARATH	SoyBase	E_val: 7.00E-27	ISS
UniRef100_UPI000233F487	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233F487 related cluster n=1 Tax=unknown RepID=UPI000233F487	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g04871

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g04871 not represented in the dataset	Glyma13g04871 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g04871

Paralog	Evidence	Comments
Glyma19g02020	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g04871 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g067300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g04871

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g04871

Limit To All Plant Sequences

>Glyma13g04871.2   sequence type=transcript   gene model=Glyma13g04871   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCAGCAAGCAATGGAGGGAAGAGAGAGCAAATCTTCTCTCACCTCACAAACGGAACCTCGCGACAACCCCCATTCCCGTTTCTCCACTCCAATGCAACAACACCAATCTCATGAAATGGTGGCTTTGAAGAAGGCATATGCGGATGTGATTCTGAACACTGTGAAGGAGGCTGCAGGTCGGGTAATGGTGGCGGAAAGGAGAGCTCTTATGTTCCAGCAAGAGCATGCTTCATCGAAAGAAGAGGCTCTTCATATGTTAATGCGTTTGAAGCAGATGATGGATGCTAAGACAGCTGAAGCAGAAAAGGCATCATTGGAGAAGCAAAGAAAAATTGATGAGCTTGAAGCACAATTGAATGAAGCCGAGGATATCATAACAGATCTAAGGGCAGAGTTGAAGCTTGTATATCTGGAGTTAGAGATGGCAAGGAATAACCAGGTCCGGCCTTTGAGTGGACAGAAATCACAGAATGAAAAGCAAGCTGTAACTTTTCAGGAGAGTGCAAAACCTGAGATTTCAATATCCAGTCCTCATAAAGAACTTAGATGTGTAACAAGCTGTGATGTGGCAAACAAATCATTGACTATGAACGTTTTAGATAATAAGTGTTGTAATGCAAAACAACAAACTGAGCAATTGCGCATCTCTAATTTGGAGGATTCTTGTGGTCATGACTCTGACTTTGCTTCCATCATCACGAAAAGCAAGGAACCTGAACTTTTCCGAAATGGATTTACTCAGAGAATCCATGCACTCGAAGGAAATTTGCTGGATGAAAAGCTGCTCAAGCAAGATGTACACAATCAACATTATGGTAAAAAACTCAGGATCATTGCTAAAGATAGTAATGGGCAAGTTGCAAAATATAGTGCTTTGACTGAGAAAATGGAAATTAAGAAGCACATTAAGCACCATAAAATACCAAAACGGAAGATATATTCCTATTTCTGGTCTCACTTTCTTTCTTGTAAAATTCATTTAAATGACAACTGTAAATCCAGCAAAGTTGTGTGCTCTCTACCTTCTATCAAGCTTAGTGCCATTAGCAAATGGAAAAGAAAGAGAAGAAGACATCCACATTTGGGAATGAAATCTTTTGCTTTTAGGAGTTGTAAACCATCATTTTCTCTTAAGCAGTGCCCATCTGTCTCTGATAATAAAAAATGTTGTGAAGATGAATATGATGCAAAGATGAAGTCAGTGGCACCTTTGACTGATGTAGAACCTGTGCTTGGGACCACTGGTGTTACAGAAAGTGTCCAGGCTGTTAATAAATTCAAGCTTGTGGAGAAGGCAATTGAGAAGGATAATGAGTTATTAAATTTAGAAGAAAGTGCTGCACAGAATCTAACAGGTCCAAGTTCTGATATGAAAGTTGAGGTTTTCGATGTTCCATCCACGAATACTGATTTGGAAGATGCAAAAGCTTTTGAAAAAAATGATAGATCTGCCAGTCAAGTAAATGACAGTAGGCCTCTGAAGTATACATTCCAAAGGAAGCGAAAAAAGGAATCCTTGGGAAACACAGACCAAAACATTGATTCTGAGAAGCGTATAGTGAAGAGGAGGTTGGAAGACAAACAAAATGGTGCATTAGAACACCAAAATCTAGCATCATAGAGGAAACTTCTACAGATAATCAGCACCTGGATCAGGTACTGATATCAATATGGATGCTGAAGGCTTGAGGATTCAACTATAGGAGGCCTCTAGCACATAAAAAATGTTTTTGTTAACATCTAGGCACCCTAGTTTTTTTTTTTCTTTTTTTTTTAAATAATTATTTCTGTATTTCTATCGAAATAGGAAAGAAAAATGCTGTTTCTGCAGTGCAGGCTCAAAGGCCCTATTGCCAAGGTCTCTTAAGTGCTTAACACTTGACTCATGACATGTTGATG

Coding sequences of Glyma13g04871

Limit To All Plant Sequences

>Glyma13g04871.1   sequence type=CDS   gene model=Glyma13g04871   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGGAAGAGAGAGCAAATCTTCTCTCACCTCACAAACGGAACCTCGCGACAACCCCCATTCCCGTTTCTCCACTCCAATGCAACAACACCAATCTCATGAAATGGTGGCTTTGAAGAAGGCATATGCGGATGTGATTCTGAACACTGTGAAGGAGGCTGCAGGTCGGGTAATGGTGGCGGAAAGGAGAGCTCTTATGTTCCAGCAAGAGCATGCTTCATCGAAAGAAGAGGCTCTTCATATGTTAATGCGTTTGAAGCAGATGATGGATGCTAAGACAGCTGAAGCAGAAAAGGCATCATTGGAGAAGCAAAGAAAAATTGATGAGCTTGAAGCACAATTGAATGAAGCCGAGGATATCATAACAGATCTAAGGGCAGAGTTGAAGCTTGTATATCTGGAGTTAGAGATGGCAAGGAATAACCAGGTCCGGCCTTTGAGTGGACAGAAATCACAGAATGAAAAGCAAGCTGTAACTTTTCAGGAGAGTGCAAAACCTGAGATTTCAATATCCAGTCCTCATAAAGAACTTAGATGTGTAACAAGCTGTGATGTGGCAAACAAATCATTGACTATGAACGTTTTAGATAATAAGTGTTGTAATGCAAAACAACAAACTGAGCAATTGCGCATCTCTAATTTGGAGGATTCTTGTGGTCATGACTCTGACTTTGCTTCCATCATCACGAAAAGCAAGGAACCTGAACTTTTCCGAAATGGATTTACTCAGAGAATCCATGCACTCGAAGGAAATTTGCTGGATGAAAAGCTGCTCAAGCAAGATGTACACAATCAACATTATGGTAAAAAACTCAGGATCATTGCTAAAGATAGTAATGGGCAAGTTGCAAAATATAGTGCTTTGACTGAGAAAATGGAAATTAAGAAGCACATTAAGCACCATAAAATACCAAAACGGAAGATATATTCCTATTTCTGGTCTCACTTTCTTTCTTGTAAAATTCATTTAAATGACAACTGTAAATCCAGCAAAGTTGTGTGCTCTCTACCTTCTATCAAGCTTAGTGCCATTAGCAAATGGAAAAGAAAGAGAAGAAGACATCCACATTTGGGAATGAAATCTTTTGCTTTTAGGAGTTGTAAACCATCATTTTCTCTTAAGCAGTGCCCATCTGTCTCTGATAATAAAAAATGTTGTGAAGATGAATATGATGCAAAGATGAAGTCAGTGGCACCTTTGACTGATGTAGAACCTGTGCTTGGGACCACTGGTGTTACAGAAAGTGTCCAGGCTGTTAATAAATTCAAGCTTGTGGAGAAGGCAATTGAGAAGGATAATGAGTTATTAAATTTAGAAGAAAGTGCTGCACAGAATCTAACAGGTCCAAGTTCTGATATGAAAGTTGAGGTTTTCGATGTTCCATCCACGAATACTGATTTGGAAGATGCAAAAGCTTTTGAAAAAAATGATAGATCTGCCAGTCAAGTAAATGACAGTAGGCCTCTGAAGTATACATTCCAAAGGAAGCGAAAAAAGGAATCCTTGGGAAACACAGACCAAAACATTGATTCTGAGAAGCGTATAGTGAAGAGGAGGTTGGAAGACAAACAAAATGGTGCATTAGAACACCAAAATCTAGCATCATAG

>Glyma13g04871.2   sequence type=CDS   gene model=Glyma13g04871   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGGAAGAGAGAGCAAATCTTCTCTCACCTCACAAACGGAACCTCGCGACAACCCCCATTCCCGTTTCTCCACTCCAATGCAACAACACCAATCTCATGAAATGGTGGCTTTGAAGAAGGCATATGCGGATGTGATTCTGAACACTGTGAAGGAGGCTGCAGGTCGGGTAATGGTGGCGGAAAGGAGAGCTCTTATGTTCCAGCAAGAGCATGCTTCATCGAAAGAAGAGGCTCTTCATATGTTAATGCGTTTGAAGCAGATGATGGATGCTAAGACAGCTGAAGCAGAAAAGGCATCATTGGAGAAGCAAAGAAAAATTGATGAGCTTGAAGCACAATTGAATGAAGCCGAGGATATCATAACAGATCTAAGGGCAGAGTTGAAGCTTGTATATCTGGAGTTAGAGATGGCAAGGAATAACCAGGTCCGGCCTTTGAGTGGACAGAAATCACAGAATGAAAAGCAAGCTGTAACTTTTCAGGAGAGTGCAAAACCTGAGATTTCAATATCCAGTCCTCATAAAGAACTTAGATGTGTAACAAGCTGTGATGTGGCAAACAAATCATTGACTATGAACGTTTTAGATAATAAGTGTTGTAATGCAAAACAACAAACTGAGCAATTGCGCATCTCTAATTTGGAGGATTCTTGTGGTCATGACTCTGACTTTGCTTCCATCATCACGAAAAGCAAGGAACCTGAACTTTTCCGAAATGGATTTACTCAGAGAATCCATGCACTCGAAGGAAATTTGCTGGATGAAAAGCTGCTCAAGCAAGATGTACACAATCAACATTATGGTAAAAAACTCAGGATCATTGCTAAAGATAGTAATGGGCAAGTTGCAAAATATAGTGCTTTGACTGAGAAAATGGAAATTAAGAAGCACATTAAGCACCATAAAATACCAAAACGGAAGATATATTCCTATTTCTGGTCTCACTTTCTTTCTTGTAAAATTCATTTAAATGACAACTGTAAATCCAGCAAAGTTGTGTGCTCTCTACCTTCTATCAAGCTTAGTGCCATTAGCAAATGGAAAAGAAAGAGAAGAAGACATCCACATTTGGGAATGAAATCTTTTGCTTTTAGGAGTTGTAAACCATCATTTTCTCTTAAGCAGTGCCCATCTGTCTCTGATAATAAAAAATGTTGTGAAGATGAATATGATGCAAAGATGAAGTCAGTGGCACCTTTGACTGATGTAGAACCTGTGCTTGGGACCACTGGTGTTACAGAAAGTGTCCAGGCTGTTAATAAATTCAAGCTTGTGGAGAAGGCAATTGAGAAGGATAATGAGTTATTAAATTTAGAAGAAAGTGCTGCACAGAATCTAACAGGTCCAAGTTCTGATATGAAAGTTGAGGTTTTCGATGTTCCATCCACGAATACTGATTTGGAAGATGCAAAAGCTTTTGAAAAAAATGATAGATCTGCCAGTCAAGTAAATGACAGTAGGCCTCTGAAGTATACATTCCAAAGGAAGCGAAAAAAGGAATCCTTGGGAAACACAGACCAAAACATTGATTCTGAGAAGCGTATAGTGAAGAGGAGGTTGGAAGACAAACAAAATGGTGCATTAGAACACCAAAATCTAGCATCATAG

Predicted protein sequences of Glyma13g04871

Limit To All Plant Sequences

>Glyma13g04871.1   sequence type=predicted peptide   gene model=Glyma13g04871   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGRESKSSLTSQTEPRDNPHSRFSTPMQQHQSHEMVALKKAYADVILNTVKEAAGRVMVAERRALMFQQEHASSKEEALHMLMRLKQMMDAKTAEAEKASLEKQRKIDELEAQLNEAEDIITDLRAELKLVYLELEMARNNQVRPLSGQKSQNEKQAVTFQESAKPEISISSPHKELRCVTSCDVANKSLTMNVLDNKCCNAKQQTEQLRISNLEDSCGHDSDFASIITKSKEPELFRNGFTQRIHALEGNLLDEKLLKQDVHNQHYGKKLRIIAKDSNGQVAKYSALTEKMEIKKHIKHHKIPKRKIYSYFWSHFLSCKIHLNDNCKSSKVVCSLPSIKLSAISKWKRKRRRHPHLGMKSFAFRSCKPSFSLKQCPSVSDNKKCCEDEYDAKMKSVAPLTDVEPVLGTTGVTESVQAVNKFKLVEKAIEKDNELLNLEESAAQNLTGPSSDMKVEVFDVPSTNTDLEDAKAFEKNDRSASQVNDSRPLKYTFQRKRKKESLGNTDQNIDSEKRIVKRRLEDKQNGALEHQNLAS*

>Glyma13g04871.2   sequence type=predicted peptide   gene model=Glyma13g04871   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGRESKSSLTSQTEPRDNPHSRFSTPMQQHQSHEMVALKKAYADVILNTVKEAAGRVMVAERRALMFQQEHASSKEEALHMLMRLKQMMDAKTAEAEKASLEKQRKIDELEAQLNEAEDIITDLRAELKLVYLELEMARNNQVRPLSGQKSQNEKQAVTFQESAKPEISISSPHKELRCVTSCDVANKSLTMNVLDNKCCNAKQQTEQLRISNLEDSCGHDSDFASIITKSKEPELFRNGFTQRIHALEGNLLDEKLLKQDVHNQHYGKKLRIIAKDSNGQVAKYSALTEKMEIKKHIKHHKIPKRKIYSYFWSHFLSCKIHLNDNCKSSKVVCSLPSIKLSAISKWKRKRRRHPHLGMKSFAFRSCKPSFSLKQCPSVSDNKKCCEDEYDAKMKSVAPLTDVEPVLGTTGVTESVQAVNKFKLVEKAIEKDNELLNLEESAAQNLTGPSSDMKVEVFDVPSTNTDLEDAKAFEKNDRSASQVNDSRPLKYTFQRKRKKESLGNTDQNIDSEKRIVKRRLEDKQNGALEHQNLAS*

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