SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G15020 | AT | Annotation by Michelle Graham. TAIR10: SIN3-like 2 | chr5:4859408-4865569 REVERSE LENGTH=1355 | SoyBase | E_val: 2.00E-36 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0010048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vernalization response | SoyBase | N/A | ISS |
| GO:0043481 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anthocyanin accumulation in tissues in response to UV light | SoyBase | N/A | ISS |
| GO:0048440 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carpel development | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG4204 | KOG | Histone deacetylase complex, SIN3 component | JGI | ISS | |
| PTHR12346 | Panther | SIN3B-RELATED | JGI | ISS | |
| PF02671 | PFAM | Paired amphipathic helix repeat | JGI | ISS | |
| UniRef100_G7KJX2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Paired amphipathic helix protein Sin3 n=1 Tax=Medicago truncatula RepID=G7KJX2_MEDTR | SoyBase | E_val: 1.00E-36 | ISS |
| UniRef100_I1LWG1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LWG1_SOYBN | SoyBase | E_val: 7.00E-40 | ISS |
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Glyma13g04825 not represented in the dataset |
Glyma13g04825 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g067600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g04825.1 sequence type=CDS gene model=Glyma13g04825 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAACGCGGCTTTGGACAAAACCAAGTCCCTGGAAGTGGCAATGGTGGTGATGTTTGTCGGGGAGCAACTACTTCCCAAAAACTAACTATAATTGATGCCGTATCCTATTTAAAGGAAGTCAAAGTGGTGTTTATGGACCAAGTGGTGAAGTATGACATGTTTTGTGAAATCTTGATAGATTTCAAGGCTAAAAGGGTTAACATTTATGATGTCATAAAAAGGGTGAAGGAGTTATTCAAAGGGCACAACAATTTGATTTTGGGATTTCAAACTTTTCTGCCAAAGGGTTATAAGATAACATTTGACAAGGATGAGGCTCCTTCGAACTTTGGACAAAACCAAGTCCCTGGAAGTGGCAATGGTGGTGATGTTTGTGGGGGAGCAACTACTTCCAAAGAAGTGACTGCCGCTGATGCCTTATCCTATTTGTGGGAAGTCAAAGCAGCATTTCAGGACCAAAGGGAGAAGTATAACATGTTCATTGAGATCATGAAAGATTTCGAGGCTCGAAGGATTCGCACTAATGCTGTCATAACAAGGGTGAAGGAGTTATTCAAAGGGCACAACAATTTGATTTTGGGATTTCAAACTTTTCTACCAGAAGGTTATGAGATAACAACTGACAAGGATGATGCTCCACCAAAGTAA
>Glyma13g04825.1 sequence type=predicted peptide gene model=Glyma13g04825 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MERGFGQNQVPGSGNGGDVCRGATTSQKLTIIDAVSYLKEVKVVFMDQVVKYDMFCEILIDFKAKRVNIYDVIKRVKELFKGHNNLILGFQTFLPKGYKITFDKDEAPSNFGQNQVPGSGNGGDVCGGATTSKEVTAADALSYLWEVKAAFQDQREKYNMFIEIMKDFEARRIRTNAVITRVKELFKGHNNLILGFQTFLPEGYEITTDKDDAPPK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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