Glyma13g04770 - SoyBase

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Report for Sequence Feature Glyma13g04770

Feature Type:	gene_model
Chromosome:	Gm13
Start:	5036646
stop:	5041000
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g04770

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G14970	AT	Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G14910.1); Has 579 Blast hits to 397 proteins in 95 species: Archae - 0; Bacteria - 294; Metazoa - 0; Fungi - 0; Plants - 86; Viruses - 0; Other Eukaryotes - 199 (source: NCBI BLink). \| chr5:4847368-4848760 FORWARD LENGTH=355	SoyBase	E_val: 7.00E-109	ISS
GO:0000023	GO-bp	Annotation by Michelle Graham. GO Biological Process: maltose metabolic process	SoyBase	N/A	ISS
GO:0015996	GO-bp	Annotation by Michelle Graham. GO Biological Process: chlorophyll catabolic process	SoyBase	N/A	ISS
GO:0019252	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process	SoyBase	N/A	ISS
UniRef100_G7JJU3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Seed maturation protein PM23 n=1 Tax=Medicago truncatula RepID=G7JJU3_MEDTR	SoyBase	E_val: 2.00E-148	ISS
UniRef100_I1LWF9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LWF9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g04770

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g04770

Paralog	Evidence	Comments
Glyma19g01900	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g04770 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g068000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g04770

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g04770

Limit To All Plant Sequences

>Glyma13g04770.1   sequence type=CDS   gene model=Glyma13g04770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACTCTCCTTCCGACCCCTCATCCACCCCCGCTTCACCGACCGGTCACTCTTTCAGTTCCTCCCACCCAAGCCTCCCCCTTTTCCTCCTCCTCCGCCACCCTCCGTCCTCCTCCCCCTCACGCGCCGCCGCGGCGGCTTCATCTCCTCCTGCCTCTCCGACGACGCCGTCTCCACGCGCAACTTCGACCGTGGCTTCACCGTGATCGCCGCCATGCTCCGCCGCATCGAGCCCCTCGACAACTCCGCCATCTCGAAAGGCGTGTCCCCCGCCGCCCGAGACTCCATGAAGCAGACCATTTCCACCATGCTCGGATTGCTCCCCTCCGACCACTTCGCTGTCACCGTCACCGTCTCCAAACACCCCCTCCACCGCCTCCTCTTCTCCTCCATCGTCACAGGGTACACTCTATGGAATGCGGAGTACAGGATGTCTCTGGCGAGGAATCTGGATATGTCGGGTTCTAGGAATGAGGGGTCAGATTGTGAAACATGTTCAGAGGTTTTGGAGGTGAAGGATGTAGCAAAAACAGTGGGTGATGAGAAAATCGATGTTGTTAATGATTTGGAAAGTTGCAGCAGCAGTGGTAGCTTGAAAGAATTTGGAGATTTGCCTTCTCAGGCTCTGAGTTACATTCAGCAGTTGGAGTCTGAGTTGACAAGTGTGATGGAGGAACTGAATGCCCAGAAGCAGGAAATGATGCAATTAGAATATGACAAGGGAAAATGGAATAATTTGTTGGAATATCTTCGGTCTCTGGATCCTGATATGGTGACTGAATTGTCCCGGCCTTCATCATTAGAAGTGGAGGATATAATTCACCAACTTGTTCAGAACATATTGAGAAGATTCTTTGTGGATGATGCTAGCTCTAGTTTTATGGAACAATCAGTGGAAGGAAACGTAGACAATCGCACAGACAGTGATGAGCTTAGTAATACAGTAGCCACTTCTCGTGATTACCTAGCAAAGTTGCTTTTCTGGTGCATGTTATTGGGTCATCACTTAAGAGGGTTGGAAAATAGATTGCATCTGAGCTGTGTTGTTGGACTGTTGTAG

Predicted protein sequences of Glyma13g04770

Limit To All Plant Sequences

>Glyma13g04770.1   sequence type=predicted peptide   gene model=Glyma13g04770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALSFRPLIHPRFTDRSLFQFLPPKPPPFPPPPPPSVLLPLTRRRGGFISSCLSDDAVSTRNFDRGFTVIAAMLRRIEPLDNSAISKGVSPAARDSMKQTISTMLGLLPSDHFAVTVTVSKHPLHRLLFSSIVTGYTLWNAEYRMSLARNLDMSGSRNEGSDCETCSEVLEVKDVAKTVGDEKIDVVNDLESCSSSGSLKEFGDLPSQALSYIQQLESELTSVMEELNAQKQEMMQLEYDKGKWNNLLEYLRSLDPDMVTELSRPSSLEVEDIIHQLVQNILRRFFVDDASSSFMEQSVEGNVDNRTDSDELSNTVATSRDYLAKLLFWCMLLGHHLRGLENRLHLSCVVGLL*

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