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Report for Sequence Feature Glyma13g04710

Feature Type:gene_model
Chromosome:Gm13
Start:4977810
stop:4980468
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g04710
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G31970AT Annotation by Michelle Graham. TAIR10: cytochrome P450, family 82, subfamily C, polypeptide 2 | chr4:15462408-15464358 FORWARD LENGTH=523 SoyBaseE_val: 1.00E-172ISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0071456GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to hypoxia SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0004497GO-mf Annotation by Michelle Graham. GO Molecular Function: monooxygenase activity SoyBaseN/AISS
GO:0005506GO-mf Annotation by Michelle Graham. GO Molecular Function: iron ion binding SoyBaseN/AISS
GO:0009055GO-mf Annotation by Michelle Graham. GO Molecular Function: electron carrier activity SoyBaseN/AISS
GO:0016705GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen SoyBaseN/AISS
GO:0019825GO-mf Annotation by Michelle Graham. GO Molecular Function: oxygen binding SoyBaseN/AISS
GO:0020037GO-mf Annotation by Michelle Graham. GO Molecular Function: heme binding SoyBaseN/AISS
KOG0156 KOG Cytochrome P450 CYP2 subfamily JGI ISS
PTHR24298Panther FAMILY NOT NAMED JGI ISS
PTHR24298:SF44Panther JGI ISS
PF00067PFAM Cytochrome P450 JGI ISS
UniRef100_I1LWF5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LWF5_SOYBN SoyBaseE_val: 0ISS
UniRef100_O49859UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cytochrome P450 82A4 n=1 Tax=Glycine max RepID=C82A4_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma13g04710
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g04710
ParalogEvidenceComments
Glyma19g01840 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g04710 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g068500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g04710
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g04710
>Glyma13g04710.1   sequence type=CDS   gene model=Glyma13g04710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTCTCTGCATCATTGCACATCTCTCTAGAAGCAGATCCTACCATAAACAATCTTCACAACTATCCAAAATGGAGTTTGTTCTAAATTACCTAAATGCCACTGCCATTGGAGTTCTTTCTCTAATCCTCTTCTGTATGTTCTTGTATAATCCTTTCAAAATTGCATTAGGTAAACAAGATGCTCCCACAGTTGCAGGTGCATGGCCAATACTTGGTCACCTTCCACTATTGAGTGGTTCAGAGACACCCCATAGGGTTTTGGGTGCTTTGGCTGATAAGTATGGACCCATATTCACCATCAAGATTGGTGTCAAAAAGGCTTTGGTAATTAGCAACTGGGAAATAGCTAAGGAATGCTTCACCACAAACGACATTGTCGTTTCGTCTCGCCCCAAGCTTGTTGCCATTGAACTCATGTGCTACAACCAAGCCATGTTTGGGTTTGCACCCTATGGTCCTTATTGGCGCCAACTAAGAAAGATTGTAAACTTAGAAATCCTCTCCAATCGCCGAGTAGAGCAACTACAGCACGTTCATGTCTCAGAAGTTCAAAGTTCAATCAAAGAGCTCTTCAATGTTTGGTCAAGCAAAAAGAATGAGTCTGGCTATGCGTTGGTGGAGTTGAATCAATGGTTTTCTCATTTGACATTCAACACGGTTCTTCGAGTGGTCGTTGGAAAGCGACTTTTCGGTGCTACAACTATGAATGATGAGGAGGCTCAGAGATGTCTGAAGGCTGTGGAAGAGTTCATGCGTCTGTTGGGGGTGTTCACGGTGGCAGATGCCATTCCTTTCTTGAGATGGTTTGATTTTGGCGGCCATGAGAGGGCTATGAAAGAAACTGCCAAAGATTTGGACAAGATTTTTGGTGAGTGGTTAGAGGAGCACAAACGAAAAAGGGCTTTTGGTGAGAACGTTGATGGAATTCAAGACTTCATGGACGTGATGCTTTCCTTGTTTGATGGAAAAACAATTGATGGCATACATGCGGATACCATCATCAAATCCACTTTACTGTCAGTAATTTCAGGAGGAACTGAAACAAACACTACTACTCTTACATGGGCAATATGTTTGATATTGAGAAATCCTATTGTATTGGAAAACATTAAAGCCGAACTTAACTTCCAAGTTGGAAAAGAGAGATGTATAAGTGAATCTGATGTAGCGAAGCTAGCATACCTTCAGGCTGTGGTCAAAGAAACTTTTAGATTGTACCCAGCAGGTCCTCTCTCAGCACCTCGTGAATTCATAGGGGATTGCACTTTAGGCGGCTATAATGTCAAAAAAGGAACTCGTCTAATTACAAATCTTTGGAAGATTCACACAGATCCTAGTGTTTGGTCAAATTCATTAGAGTTCAAACCAGAAAGGTTTCTTACCACCCATAAAGACATTGATGTTAGGGGACATCATTTTGAACTATTACCATTTGGTGGTGGTAGAAGAGTGTGTCCTGGAATATCTTTTAGCCTTCAATTGGTTCATTTCACTCTTGCCAATCTTTTTCATTCTTTTGAATTCTTAAATCCATCAAATGAACCCATTGATATGACTGAAACCCTTGGATTAACCAACACTAAAGCCACTCCACTTGAGATTCTTATTAAACCTCGATTATCTCCTAGTTGTTATGTATGA
Predicted protein sequences of Glyma13g04710
>Glyma13g04710.1   sequence type=predicted peptide   gene model=Glyma13g04710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MILCIIAHLSRSRSYHKQSSQLSKMEFVLNYLNATAIGVLSLILFCMFLYNPFKIALGKQDAPTVAGAWPILGHLPLLSGSETPHRVLGALADKYGPIFTIKIGVKKALVISNWEIAKECFTTNDIVVSSRPKLVAIELMCYNQAMFGFAPYGPYWRQLRKIVNLEILSNRRVEQLQHVHVSEVQSSIKELFNVWSSKKNESGYALVELNQWFSHLTFNTVLRVVVGKRLFGATTMNDEEAQRCLKAVEEFMRLLGVFTVADAIPFLRWFDFGGHERAMKETAKDLDKIFGEWLEEHKRKRAFGENVDGIQDFMDVMLSLFDGKTIDGIHADTIIKSTLLSVISGGTETNTTTLTWAICLILRNPIVLENIKAELNFQVGKERCISESDVAKLAYLQAVVKETFRLYPAGPLSAPREFIGDCTLGGYNVKKGTRLITNLWKIHTDPSVWSNSLEFKPERFLTTHKDIDVRGHHFELLPFGGGRRVCPGISFSLQLVHFTLANLFHSFEFLNPSNEPIDMTETLGLTNTKATPLEILIKPRLSPSCYV*






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