Glyma13g04640 - SoyBase

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Report for Sequence Feature Glyma13g04640

Feature Type:	gene_model
Chromosome:	Gm13
Start:	4938804
stop:	4944579
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g04640

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G04700	AT	Annotation by Michelle Graham. TAIR10: ferredoxin thioredoxin reductase catalytic beta chain family protein \| chr2:1646961-1648345 FORWARD LENGTH=146	SoyBase	E_val: 3.00E-80	ISS
GO:0000023	GO-bp	Annotation by Michelle Graham. GO Biological Process: maltose metabolic process	SoyBase	N/A	ISS
GO:0019252	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process	SoyBase	N/A	ISS
GO:0043085	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of catalytic activity	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0008937	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ferredoxin-NAD(P) reductase activity	SoyBase	N/A	ISS
GO:0030385	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ferredoxin:thioredoxin reductase activity	SoyBase	N/A	ISS
PF02943	PFAM	Ferredoxin thioredoxin reductase catalytic beta chain	JGI		ISS
UniRef100_O49856	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic n=1 Tax=Glycine max RepID=FTRC_SOYBN	SoyBase	E_val: 3.00E-104	ISS
UniRef100_O49856	UniRef	Annotation by Michelle Graham. Best UniRef hit: Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic n=1 Tax=Glycine max RepID=FTRC_SOYBN	SoyBase	E_val: 3.00E-104	ISS

Expression Patterns of Glyma13g04640

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g04640

Paralog	Evidence	Comments
Glyma19g01650	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g04640 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g069100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g04640

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g04640

Limit To All Plant Sequences

>Glyma13g04640.2   sequence type=transcript   gene model=Glyma13g04640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCGGTAATGGTTTCCATGAACCACAGCATAATAAATCAATTTTAAAAAAATGGTTTACAAATAATACAAAAAAAACGAAGATAAGAACATATAAAGTGCAGAGCATACAGGTGTTGTTTTGTTTCGGTCTTTCTTTCTCACACAATCTGGGAACCACACACACAAACCATTCCCTTTTCTCACTACGGCAATGACCACCCAAGCTTCCACCTTCGCCGTCGCCGTTCCCTCCGTCGCAACCCCTTTCCGCCGCCACCGGAATCCCTTCGTTGTTCGAGCCCAAGCGGAACCTTCAGATAAATCCGTTGAAATTATGAGGAAGTTCTCAGAGCAATACGCCCGTAAGTCAGGAACATACTTTTGTGTTGACAAGGGGGTCACTTCTGTTGTTATCAAGGGGTTGGCTGACCATAAAGATACGTTGGGTGCACCACTGTGCCCTTGCCGGCATTACGATGATAAAGCTGCTGAGGTTGCACAAGGATTTTGGAATTGCCCTTGTGTTCCCATGAGAGAGAGGAAGGAGTGCCACTGCATGCTATTTCTCACACCTGATAACGATTTTGCTGGCAATGAACAGACTATCACCTTGGATGAAATTAAAGAATCAACAGCCAACATGTAGCACAGATTATTGTGTATTGAGTTACTTGTCCGTTGTTACAGGCTGTATGTTTTGAAAGACAAGTGAAAAGAAAAGTGTAACGATAAGTAGATGCAAAAAACGCAGCTTTGTTTTAGCTAGTTTTGTTTTAAGTTTCATATCTTTACCATCAGTAAAACCAACACAACCGATGAATAGTATGCATGACAAGGAAATCTTTAGTATGTTTCTATGAACAAGGATGTACATTGAAAAGTGATATATTTATGAGCTTATT

Coding sequences of Glyma13g04640

Limit To All Plant Sequences

>Glyma13g04640.1   sequence type=CDS   gene model=Glyma13g04640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCACCCAAGCTTCCACCTTCGCCGTCGCCGTTCCCTCCGTCGCAACCCCTTTCCGCCGCCACCGGAATCCCTTCGTTGTTCGAGCCCAAGCGGAACCTTCAGATAAATCCGTTGAAATTATGAGGAAGTTCTCAGAGCAATACGCCCGTAAGTCAGGAACATACTTTTGTGTTGACAAGGGGGTCACTTCTGTTGTTATCAAGGGGTTGGCTGACCATAAAGATACGTTGGGTGCACCACTGTGCCCTTGCCGGCATTACGATGATAAAGCTGCTGAGGTTGCACAAGGATTTTGGAATTGCCCTTGTGTTCCCATGAGAGAGAGGAAGGAGTGCCACTGCATGCTATTTCTCACACCTGATAACGATTTTGCTGGCAATGAACAGACTATCACCTTGGATGAAATTAAAGAATCAACAGCCAACATGTAG

>Glyma13g04640.2   sequence type=CDS   gene model=Glyma13g04640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCACCCAAGCTTCCACCTTCGCCGTCGCCGTTCCCTCCGTCGCAACCCCTTTCCGCCGCCACCGGAATCCCTTCGTTGTTCGAGCCCAAGCGGAACCTTCAGATAAATCCGTTGAAATTATGAGGAAGTTCTCAGAGCAATACGCCCGTAAGTCAGGAACATACTTTTGTGTTGACAAGGGGGTCACTTCTGTTGTTATCAAGGGGTTGGCTGACCATAAAGATACGTTGGGTGCACCACTGTGCCCTTGCCGGCATTACGATGATAAAGCTGCTGAGGTTGCACAAGGATTTTGGAATTGCCCTTGTGTTCCCATGAGAGAGAGGAAGGAGTGCCACTGCATGCTATTTCTCACACCTGATAACGATTTTGCTGGCAATGAACAGACTATCACCTTGGATGAAATTAAAGAATCAACAGCCAACATGTAG

Predicted protein sequences of Glyma13g04640

Limit To All Plant Sequences

>Glyma13g04640.1   sequence type=predicted peptide   gene model=Glyma13g04640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTTQASTFAVAVPSVATPFRRHRNPFVVRAQAEPSDKSVEIMRKFSEQYARKSGTYFCVDKGVTSVVIKGLADHKDTLGAPLCPCRHYDDKAAEVAQGFWNCPCVPMRERKECHCMLFLTPDNDFAGNEQTITLDEIKESTANM*

>Glyma13g04640.2   sequence type=predicted peptide   gene model=Glyma13g04640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTTQASTFAVAVPSVATPFRRHRNPFVVRAQAEPSDKSVEIMRKFSEQYARKSGTYFCVDKGVTSVVIKGLADHKDTLGAPLCPCRHYDDKAAEVAQGFWNCPCVPMRERKECHCMLFLTPDNDFAGNEQTITLDEIKESTANM*

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