Glyma13g04610 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma13g04610

Feature Type:	gene_model
Chromosome:	Gm13
Start:	4912155
stop:	4914576
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g04610

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G40140	AT	Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein with ARM repeat domain \| chr5:16057347-16058999 FORWARD LENGTH=550	SoyBase	E_val: 8.00E-170	ISS
GO:0016567	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein ubiquitination	SoyBase	N/A	ISS
GO:0000151	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ubiquitin ligase complex	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0004842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity	SoyBase	N/A	ISS
PTHR23315	Panther	BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING	JGI		ISS
PTHR23315:SF40	Panther	OS06G0238000 PROTEIN	JGI		ISS
PF00514	PFAM	Armadillo/beta-catenin-like repeat	JGI		ISS
PF04564	PFAM	U-box domain	JGI		ISS
UniRef100_G7KJD0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: U-box domain-containing protein n=1 Tax=Medicago truncatula RepID=G7KJD0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233ADEF	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233ADEF related cluster n=1 Tax=unknown RepID=UPI000233ADEF	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g04610

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g04610

Paralog	Evidence	Comments
Glyma19g01630	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g04610 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g069300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g04610

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g04610

Limit To All Plant Sequences

>Glyma13g04610.2   sequence type=CDS   gene model=Glyma13g04610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGATTCAACAAAGCTTGAAGCTCACAATCCACAAGAAATGGCCATCATCACCCAAAAAACCACCAAAAGAATCAGAACCAATAACCCCCACCCCCAACACACCAAAGCTGAAATGGAAGAAAATCTTCTTCCAAACCAAAACCAAAACCCAAATACAAACCCCACCAGAAGAATTCCTCTGTCCTATTTCGCGTTCCCTCATGTTCGACCCCGTCATCGTCTCCTCCGGCCACTCCTACGAACGCTCCTCCGTCGAAGCCTGCAAAAATGTCAATTTTACCCCTCAACTCCCCGACGGCACCACCCCCGATTTCTCCACCCTCATCCCCAACCTCGCCCTCAAATCAGCCATCCTCAAATGGTGCCAATCCACCCACACACCTCCTCCTCACCCCAACAACAACCCCGTACAAACCTTAATCTCCTCCAACCCTAACCTCGTACACACCATAAACCCCTCGAACACAAACCTCGTACACACAAACCCAAACCCCTCCCCAGAGAAAATCTCCGACCAAGATTTGATTCTGAACTCCCTGAGCGAAAACCCACCACACCCCGACAACAACAACCACCTCGTACAAACCTTAATCTCCTCCAACGCAAACCTCGTACACCCAGAGAAAATCTCCGACAAAGATTTGATTTTGAATTCTCTGAACGAAAACCCACCAGTGAAGAACCTCTGCCACCACGCGGAAACCGAGGTTCCCATAAGGCCGACACACTTGTACACGAGCTCCGAGGAATCCATAGCGACAACCTCGGCCTCAACGCCGCCGCTTCAGTTCTCCACGCGCCCGAGCTGCTGCTACTACTCTTCACCTTCGTCTTCAGAACTCGAACCCGCGACAATCCCAGAAGAAGAAGAGATCATGACAAAGCTCAAAAACCCTCAACTCAATGCAATCGAAGAAGCGCTTATCTCTCTCAGAAAACTAACGAGAATAAGAGAAGAAACAAGGCTTCAACTTTGCACCCCTCGGTTACTCTCCGCGTTACGCTCACTCGTTTTGTCGAAGCACGTGAACGTTCAGGTGAACGCTCTGGCATCGGTGGTGAACCTCTCGTTGGAGAAGAGTAATAAAGTGAAGATCGTGCGGTCGGGGATGGTTCCGCCGTTGATCGAGGTTTTGAAGTTTGGATCCTCTGAGGCGCAGGAGCACGGTGCGGGCGCGTTGTTTAGTTTGGCATTGGATGATGATAACAAAACCGCGATTGGGGTTTTGGGGGGTTTGGCACCGTTGCTTCACATGCTCCGATCCGAGAGCGAGCGGACTCGGCATGACTCGGCATTGGCGCTTTACCATTTGTCTTTGGTCCAGAGTAACCGATCCAAGATGGTTAAACTCGGTTCGGTTCCGGTTCTATTGAATATGGTTAAGTCGGGTCACATGACGGGTCGGGTTTTGTTGATTTTGGGGAACTTGGGTTCCGGGTCGGACGGGAGGGCCACGATGCTTGATGCGGGCATGGTGGAGTGTTTGGTGGGGTTGCTCAGTGGGGCCGAGTCAAGGAGCGGGTCGACTCGAGAGAGTTGCGTGTCGGTGATGTACGCGCTGAGCCACGGCGGGTTGAGGTTTAAGGCAGTGGCGAAGGTGGCTGGGGTGATGGAGGTGATGCAAAAGGTGGAGAAGGTGGGGACTGAGAGAGCTAGGAATAAGGTGAGGAAGATATTGGAGATTATGAGGGCCAAGGAAGTGGAGGAAGAGGATCATGTGGATTGGGAGGAGTTGCTCGACTCGGGATTGCCTTGCCGGACTAGGACTAGACTCGGTGCTGGGTTGGACGACTCAACTCCTAACTCGGCCCAGTTTTGA

Predicted protein sequences of Glyma13g04610

Limit To All Plant Sequences

>Glyma13g04610.2   sequence type=predicted peptide   gene model=Glyma13g04610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEIQQSLKLTIHKKWPSSPKKPPKESEPITPTPNTPKLKWKKIFFQTKTKTQIQTPPEEFLCPISRSLMFDPVIVSSGHSYERSSVEACKNVNFTPQLPDGTTPDFSTLIPNLALKSAILKWCQSTHTPPPHPNNNPVQTLISSNPNLVHTINPSNTNLVHTNPNPSPEKISDQDLILNSLSENPPHPDNNNHLVQTLISSNANLVHPEKISDKDLILNSLNENPPVKNLCHHAETEVPIRPTHLYTSSEESIATTSASTPPLQFSTRPSCCYYSSPSSSELEPATIPEEEEIMTKLKNPQLNAIEEALISLRKLTRIREETRLQLCTPRLLSALRSLVLSKHVNVQVNALASVVNLSLEKSNKVKIVRSGMVPPLIEVLKFGSSEAQEHGAGALFSLALDDDNKTAIGVLGGLAPLLHMLRSESERTRHDSALALYHLSLVQSNRSKMVKLGSVPVLLNMVKSGHMTGRVLLILGNLGSGSDGRATMLDAGMVECLVGLLSGAESRSGSTRESCVSVMYALSHGGLRFKAVAKVAGVMEVMQKVEKVGTERARNKVRKILEIMRAKEVEEEDHVDWEELLDSGLPCRTRTRLGAGLDDSTPNSAQF*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain