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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G14930 | AT | Annotation by Michelle Graham. TAIR10: senescence-associated gene 101 | chr5:4828754-4830769 FORWARD LENGTH=537 | SoyBase | E_val: 4.00E-92 | ISS |
| GO:0006629 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid metabolic process | SoyBase | N/A | ISS |
| GO:0007568 | GO-bp | Annotation by Michelle Graham. GO Biological Process: aging | SoyBase | N/A | ISS |
| GO:0009627 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance | SoyBase | N/A | ISS |
| GO:0009697 | GO-bp | Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0009863 | GO-bp | Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010200 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to chitin | SoyBase | N/A | ISS |
| GO:0030968 | GO-bp | Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response | SoyBase | N/A | ISS |
| GO:0031348 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response | SoyBase | N/A | ISS |
| GO:0045087 | GO-bp | Annotation by Michelle Graham. GO Biological Process: innate immune response | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0004806 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: triglyceride lipase activity | SoyBase | N/A | ISS |
| PF01764 | PFAM | Lipase (class 3) | JGI | ISS | |
| UniRef100_G7KJC3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: SAG101 n=1 Tax=Medicago truncatula RepID=G7KJC3_MEDTR | SoyBase | E_val: 1.00E-156 | ISS |
| UniRef100_I1LWE5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LWE5_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma13g04540 not represented in the dataset |
Glyma13g04540 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g069800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g04540.2 sequence type=transcript gene model=Glyma13g04540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CCTGAAAACTAAAAACAAATTTTGAAAATACAAAACAAACACACTTTGTTTCTTTTAATTTTCTGGGAATTTATTGTTCTTCCTTTATAAGTCCTTATAACAATCGTTACAATCCTAATCCTAATGCAGATTGATAGCTCCCCTCGATTGATTGTTACTGGACGTGGTCTTGGAGGACCAATTGCTTCTCTCTTCACTTTATCGCTATTAGGTAACAAGAATTCCTCTGAGAAAAAGAAACCCCCTCTCTGCATCACCTTTGGTTCTCCCCTTGTCGGTAACAAAAAGTTTCAAGAAGCCATATCACGTAGTTCTACATGGAGTTCTTGCTTTCTACATGTGGTCTCTATCAAAGACCCATTTCTCAAAAGATTGAATCCTGACATCAAGGATTACATGCCTTTTGGGACATTTCTCTTCTGCTCTGATATAAGTTCTACCTGTTTTGAGAACCCCAAGTCTGTTTTGGAACTTCTTGTGATCTCAATCAAAGATCAAAATCAAGCATTTCCGTCCATAGATTATGGCAACATTGTGGGAAATCTCTATATTAAAGCAATTTGCAAGGACTTTACCCCACGGGGGCAGGACTTTACTGATTCTAATTCACTGCGTGCAAGTATCCGTTTGCAGTTGTGGGCAGCACTAGGATTGACACCAGATATGCAGCAACAACACCTGAACATTGATATAAATGCTTTGGTAACAAAGTTGGAAAAGCTGGAGAAGGAAGTGATCTTCCAGAAGGGGAACAAATTTGATCCATCCAAGAAATTGAATGTGATGAAGATAGAAATGGCCAAACTTGAGTGGTACAAGAAGTATTCCAAAAATAATAAGATTGGCTACTATGACAGCTTCAAGAGGGGTATCTCAACAAGCGACCTAGATGTTGTTCAGTGCCAGAAAACCCTCAGAAATTACTGGATTGACATGGTTGCAGAGGCAGAGCTGAAACCTCAGACAGAAGGTGCAGCTTTTCGTACTCGCTGGCTTTTTGGCGGAACTAATTACAGGAGAATGTTTGAACCCCTAGATATTGCTGAGTACTACGCGAATGGTGGTAAAGACTATGAGGCTAAGGGAAGATCTAGACATTATATAGTGTTGCAGGAGTGGCTGGAAGAGGATAAGAAAGAAAAAAGCAATTCAAACAGTACAAACAAAAAGGATGTGGAATCTATTTTAACTTTTGACTCTTGCTTTTGGGCACATGTTGAAGAAGCTATCCTTTCATGCAAAGTGTTGAAGGATGAACAATCTAGTGTGACAGAGAAGGAAGAGGAAACTGGGAAGTTGCTTGAATTCGAGAAGTATGTTTATGGGTTGCTCACGAAATATGAAGTGTCATCAGAGATTTTCCTAAGGCAAAGCAGCTACATGATTTGGTGGAATCAGTATAAGGCAATTAAGGGAACTTCTTATAATTCAGCACTCGCAGACTTCATGAGCAATCCCGATCATTATAATGTGCTGTATATTAAGGGAACTTATAATTTCCCCCCTCAGGCTTAGTGATTAGTGAACGTCCGTGTGGTTGAACAGTGTAAAATAAATTGTGGTTTTATCTCACTGTGCACCTTTTAATAAGCTTTTTTTATATTTTCCCTTGTTGATTTTTGTTAAGGATCTTGGTTTTACCCTCCCTTGTGTTGTGGTATTGGAAACTCATGCAATTGTCTTGACTTGTGATATTGGAAACTCTTGCAATTGTCTTACCTTGCAAACCTTCACTCATTATTCTTGAAAATTTAAGTTGAGAGCAATGGATGCAGGCTAGTTTGTATTAATGTAATCTGAAAGGCTCGCTGTGAAAAATCTTATTTTTTGATGTTAATTTTCTAGCTATCTCAATTTCAATTAGAAAATTGAACGAGTTTGCCATCTATTTGATAGAATGAAGGAATAAGAAGCTAGAGCAC
>Glyma13g04540.1 sequence type=CDS gene model=Glyma13g04540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACCCTTCCTCAATCATTTGGCTGTGGACTTGTGCAAGCACCCTTGGTGACAAGCTCTGGTCTTCTTACTAAAGTTTGGAGTGTTATCTCTTCTCGTGATGAAGACATAGTTTCATACTCAGGAAATAATGGACTGTCCTTGAAAGTTTCTGAGGATTCGGGTTTGACGGTTGTTGCGTTTGAGGTCAACCCGGATTTTGATCTTCAATCTACAGTTGTTTCTTTCTCTGATCCCAAGGAGAATAATTTGAACCGCTTTGAGTTTCTTTGTACCAAGAAACATCCAGATTTCTCTGTCAACAAGTCTGTAGTTGATCTTTTTTCTAAAAATCTTCCGAGGCTTGATGAGTTGAAGTCCAAGATTGATAGCTCCCCTCGATTGATTGTTACTGGACGTGGTCTTGGAGGACCAATTGCTTCTCTCTTCACTTTATCGCTATTAGGTAACAAGAATTCCTCTGAGAAAAAGAAACCCCCTCTCTGCATCACCTTTGGTTCTCCCCTTGTCGGTAACAAAAAGTTTCAAGAAGCCATATCACGTAGTTCTACATGGAGTTCTTGCTTTCTACATGTGGTCTCTATCAAAGACCCATTTCTCAAAAGATTGAATCCTGACATCAAGGATTACATGCCTTTTGGGACATTTCTCTTCTGCTCTGATATAAGTTCTACCTGTTTTGAGAACCCCAAGTCTGTTTTGGAACTTCTTGTGATCTCAATCAAAGATCAAAATCAAGCATTTCCGTCCATAGATTATGGCAACATTGTGGGAAATCTCTATATTAAAGCAATTTGCAAGGACTTTACCCCACGGGGGCAGGACTTTACTGATTCTAATTCACTGCGTGCAAGTATCCGTTTGCAGTTGTGGGCAGCACTAGGATTGACACCAGATATGCAGCAACAACACCTGAACATTGATATAAATGCTTTGGTAACAAAGTTGGAAAAGCTGGAGAAGGAAGTGATCTTCCAGAAGGGGAACAAATTTGATCCATCCAAGAAATTGAATGTGATGAAGATAGAAATGGCCAAACTTGAGTGGTACAAGAAGTATTCCAAAAATAATAAGATTGGCTACTATGACAGCTTCAAGAGGGGTATCTCAACAAGCGACCTAGATGTTGTTCAGTGCCAGAAAACCCTCAGAAATTACTGGATTGACATGGTTGCAGAGGCAGAGCTGAAACCTCAGACAGAAGGTGCAGCTTTTCGTACTCGCTGGCTTTTTGGCGGAACTAATTACAGGAGAATGTTTGAACCCCTAGATATTGCTGAGTACTACGCGAATGGTGGTAAAGACTATGAGGCTAAGGGAAGATCTAGACATTATATAGTGTTGCAGGAGTGGCTGGAAGAGGATAAGAAAGAAAAAAGCAATTCAAACAGTACAAACAAAAAGGATGTGGAATCTATTTTAACTTTTGACTCTTGCTTTTGGGCACATGTTGAAGAAGCTATCCTTTCATGCAAAGTGTTGAAGGATGAACAATCTAGTGTGACAGAGAAGGAAGAGGAAACTGGGAAGTTGCTTGAATTCGAGAAGTATGTTTATGGGTTGCTCACGAAATATGAAGTGTCATCAGAGATTTTCCTAAGGCAAAGCAGCTACATGATTTGGTGGAATCAGTATAAGGCAATTAAGGGAACTTCTTATAATTCAGCACTCGCAGACTTCATGAGCAATCCCGATCATTATAATGTGCTGTATATTAAGGGAACTTATAATTTCCCCCCTCAGGCTTAG >Glyma13g04540.2 sequence type=CDS gene model=Glyma13g04540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAGATTGATAGCTCCCCTCGATTGATTGTTACTGGACGTGGTCTTGGAGGACCAATTGCTTCTCTCTTCACTTTATCGCTATTAGGTAACAAGAATTCCTCTGAGAAAAAGAAACCCCCTCTCTGCATCACCTTTGGTTCTCCCCTTGTCGGTAACAAAAAGTTTCAAGAAGCCATATCACGTAGTTCTACATGGAGTTCTTGCTTTCTACATGTGGTCTCTATCAAAGACCCATTTCTCAAAAGATTGAATCCTGACATCAAGGATTACATGCCTTTTGGGACATTTCTCTTCTGCTCTGATATAAGTTCTACCTGTTTTGAGAACCCCAAGTCTGTTTTGGAACTTCTTGTGATCTCAATCAAAGATCAAAATCAAGCATTTCCGTCCATAGATTATGGCAACATTGTGGGAAATCTCTATATTAAAGCAATTTGCAAGGACTTTACCCCACGGGGGCAGGACTTTACTGATTCTAATTCACTGCGTGCAAGTATCCGTTTGCAGTTGTGGGCAGCACTAGGATTGACACCAGATATGCAGCAACAACACCTGAACATTGATATAAATGCTTTGGTAACAAAGTTGGAAAAGCTGGAGAAGGAAGTGATCTTCCAGAAGGGGAACAAATTTGATCCATCCAAGAAATTGAATGTGATGAAGATAGAAATGGCCAAACTTGAGTGGTACAAGAAGTATTCCAAAAATAATAAGATTGGCTACTATGACAGCTTCAAGAGGGGTATCTCAACAAGCGACCTAGATGTTGTTCAGTGCCAGAAAACCCTCAGAAATTACTGGATTGACATGGTTGCAGAGGCAGAGCTGAAACCTCAGACAGAAGGTGCAGCTTTTCGTACTCGCTGGCTTTTTGGCGGAACTAATTACAGGAGAATGTTTGAACCCCTAGATATTGCTGAGTACTACGCGAATGGTGGTAAAGACTATGAGGCTAAGGGAAGATCTAGACATTATATAGTGTTGCAGGAGTGGCTGGAAGAGGATAAGAAAGAAAAAAGCAATTCAAACAGTACAAACAAAAAGGATGTGGAATCTATTTTAACTTTTGACTCTTGCTTTTGGGCACATGTTGAAGAAGCTATCCTTTCATGCAAAGTGTTGAAGGATGAACAATCTAGTGTGACAGAGAAGGAAGAGGAAACTGGGAAGTTGCTTGAATTCGAGAAGTATGTTTATGGGTTGCTCACGAAATATGAAGTGTCATCAGAGATTTTCCTAAGGCAAAGCAGCTACATGATTTGGTGGAATCAGTATAAGGCAATTAAGGGAACTTCTTATAATTCAGCACTCGCAGACTTCATGAGCAATCCCGATCATTATAATGTGCTGTATATTAAGGGAACTTATAATTTCCCCCCTCAGGCTTAG
>Glyma13g04540.1 sequence type=predicted peptide gene model=Glyma13g04540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTLPQSFGCGLVQAPLVTSSGLLTKVWSVISSRDEDIVSYSGNNGLSLKVSEDSGLTVVAFEVNPDFDLQSTVVSFSDPKENNLNRFEFLCTKKHPDFSVNKSVVDLFSKNLPRLDELKSKIDSSPRLIVTGRGLGGPIASLFTLSLLGNKNSSEKKKPPLCITFGSPLVGNKKFQEAISRSSTWSSCFLHVVSIKDPFLKRLNPDIKDYMPFGTFLFCSDISSTCFENPKSVLELLVISIKDQNQAFPSIDYGNIVGNLYIKAICKDFTPRGQDFTDSNSLRASIRLQLWAALGLTPDMQQQHLNIDINALVTKLEKLEKEVIFQKGNKFDPSKKLNVMKIEMAKLEWYKKYSKNNKIGYYDSFKRGISTSDLDVVQCQKTLRNYWIDMVAEAELKPQTEGAAFRTRWLFGGTNYRRMFEPLDIAEYYANGGKDYEAKGRSRHYIVLQEWLEEDKKEKSNSNSTNKKDVESILTFDSCFWAHVEEAILSCKVLKDEQSSVTEKEEETGKLLEFEKYVYGLLTKYEVSSEIFLRQSSYMIWWNQYKAIKGTSYNSALADFMSNPDHYNVLYIKGTYNFPPQA* >Glyma13g04540.2 sequence type=predicted peptide gene model=Glyma13g04540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQIDSSPRLIVTGRGLGGPIASLFTLSLLGNKNSSEKKKPPLCITFGSPLVGNKKFQEAISRSSTWSSCFLHVVSIKDPFLKRLNPDIKDYMPFGTFLFCSDISSTCFENPKSVLELLVISIKDQNQAFPSIDYGNIVGNLYIKAICKDFTPRGQDFTDSNSLRASIRLQLWAALGLTPDMQQQHLNIDINALVTKLEKLEKEVIFQKGNKFDPSKKLNVMKIEMAKLEWYKKYSKNNKIGYYDSFKRGISTSDLDVVQCQKTLRNYWIDMVAEAELKPQTEGAAFRTRWLFGGTNYRRMFEPLDIAEYYANGGKDYEAKGRSRHYIVLQEWLEEDKKEKSNSNSTNKKDVESILTFDSCFWAHVEEAILSCKVLKDEQSSVTEKEEETGKLLEFEKYVYGLLTKYEVSSEIFLRQSSYMIWWNQYKAIKGTSYNSALADFMSNPDHYNVLYIKGTYNFPPQA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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