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Report for Sequence Feature Glyma13g04491

Feature Type:gene_model
Chromosome:Gm13
Start:4827360
stop:4833801
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g04491
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G01410AT Annotation by Michelle Graham. TAIR10: Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr3:153650-155439 REVERSE LENGTH=294 SoyBaseE_val: 1.00E-84ISS
GO:0006310GO-bp Annotation by Michelle Graham. GO Biological Process: DNA recombination SoyBaseN/AISS
GO:0007059GO-bp Annotation by Michelle Graham. GO Biological Process: chromosome segregation SoyBaseN/AISS
GO:0007062GO-bp Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion SoyBaseN/AISS
GO:0007129GO-bp Annotation by Michelle Graham. GO Biological Process: synapsis SoyBaseN/AISS
GO:0007131GO-bp Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination SoyBaseN/AISS
GO:0010332GO-bp Annotation by Michelle Graham. GO Biological Process: response to gamma radiation SoyBaseN/AISS
GO:0031048GO-bp Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA SoyBaseN/AISS
GO:0032204GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of telomere maintenance SoyBaseN/AISS
GO:0032504GO-bp Annotation by Michelle Graham. GO Biological Process: multicellular organism reproduction SoyBaseN/AISS
GO:0042138GO-bp Annotation by Michelle Graham. GO Biological Process: meiotic DNA double-strand break formation SoyBaseN/AISS
GO:0043247GO-bp Annotation by Michelle Graham. GO Biological Process: telomere maintenance in response to DNA damage SoyBaseN/AISS
GO:0045132GO-bp Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation SoyBaseN/AISS
GO:0048451GO-bp Annotation by Michelle Graham. GO Biological Process: petal formation SoyBaseN/AISS
GO:0048453GO-bp Annotation by Michelle Graham. GO Biological Process: sepal formation SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0004518GO-mf Annotation by Michelle Graham. GO Molecular Function: nuclease activity SoyBaseN/AISS
GO:0004523GO-mf Annotation by Michelle Graham. GO Molecular Function: ribonuclease H activity SoyBaseN/AISS
PF00075PFAM RNase H JGI ISS
UniRef100_B9RUE6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Nuclease, putative n=1 Tax=Ricinus communis RepID=B9RUE6_RICCO SoyBaseE_val: 3.00E-103ISS
UniRef100_UPI0001BA8174UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0001BA8174 related cluster n=1 Tax=unknown RepID=UPI0001BA8174 SoyBaseE_val: 0ISS

Expression Patterns of Glyma13g04491
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g04491 not represented in the dataset
Glyma13g04491 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g04491
ParalogEvidenceComments
Glyma19g01570 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g04491 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g070200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g04491
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma13g04491
>Glyma13g04491.2   sequence type=transcript   gene model=Glyma13g04491   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTAGTCTTTAGTCAGTTGCAGTTTTGACATGCTATCTCACTCTGTCGCTTTCACTCAACATAGCTTCTTCTCATCAATTTCACGAACTTCGAAACTGTTGCTTTTTTCAAAACTCAAAAACAGGTTTTTCTTTCATAGTATCACAGAAGAGAAAGTGATTCTAGAGTGTTGTTGCAATGGCTGAGGAGAAAGACGCTTTCTACGTTGTAAGGAAAGGGGATGTTGTTGGCATCTACAAGTCCTTCAGTGACATCCAACCTTTACTTGCATCTTCTGTGTCTAGTGACCCTGTAAGTATTTACAAAGGGTACTCGTTACCTCAGAAGACTGAGGAGTACCTTGTCTCACATGGGCTCAAGGGAGCCCCTTATTCTATTAGTGCAGCTGATGTGAACGAGGGGCTTTTTGGAAGACTTGTTGCTTGTCCTTATCAGGATCCATATTCATCTGGAGGAAGAGCTTTCAATGTGAGTTCCTCATCAAGAAACTTGCAAGGAGCCATTCAGTTTGACACTGGCAAGCTGGCTGGATCATTTTCATATCCACCAAATTCACTGAGGAATCATACACTAGGTGGATCCCAAGCTGAGTGGTCTTCTTGTCTTTCGTGTACCCTTCATTTTGATGGTGCTTCCAAAGGAAATCCTGGACCTGCTGGTGCAGGAGCTATACTGCATGATGGGAGCAAGGTCTATCGGTTGCGTGAAGGAGTGGGCATTCAAACAAATAATGTTGCGGAGTATCGAAGTTTAATACTAGGATTGAAACATGCCCTTAAGAAAGGTTATAAGCACATTATTGTCCAAGGAGACTCTCTGCTTGTCTGCAATCAGATTCAGGGTTTATGGAAAATCAAAAACCAGAATATGGGTACCTTGTGTGCTGAGGCCAAGGAGCTGAAGGATAAGTTTCTGTCATTCAAGATCAGTCATATTCCTAGGGAATACAACTCTGAAGCTGATGCTCAAGCAAACCTGGCCATAAATCTCAGAGCTTGTGAAGTTCAAGAAGATTGTCAGTTGCTTTAATGCTCAACTTTGGTATGCTTGTGCCTTGCTTTCAGCTTGTGAAAATTCGGGTGCATTTTAGCTGTAGATGACCTTTTTTTTTTTTGTACAGGCAGTGCCTAATTATTTGGGACTTGGGACACTGCATGCCACTGATAAAGTACTGTTGGCAATTTCAATTTGTTAGTCAATGTGCTATGACATGTAGCATTAGCTTTAAGACTCAGTGGTACTTAGGATGGTGTTGTCTCAGCTAATGTAACACCGTATTGTAAGTAACCATGCATGTTTCTGAATCTTAGTGTTATCTGTCTTCATTCATTTGCTTTAACTGGTAAAATGAGTGTAGTAACTCGCTGTTATTAGTAAGTAACATGAGTGATGTTGCTTCGTGTCATGATCCCAAAATGAAAATTCCTTTCAAATATATTATTTGTAAATTATGCGTGATTAGTTACTACAAATGAAAATTCTTTTTCTATAAAAAAAGGATAAAATGAGATTTGGCTATTC

>Glyma13g04491.3   sequence type=transcript   gene model=Glyma13g04491   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTAGTCTTTAGTCAGTTGCAGTTTTGACATGCTATCTCACTCTGTCGCTTTCACTCAACATAGCTTCTTCTCATCAATTTCACGAACTTCGAAACTGTTGCTTTTTTCAAAACTCAAAAACAGGTTTTTCTTTCATAGTATCACAGAAGAGAAAGTGATTCTAGAGTGTTGTTGCAATGGCTGAGGAGAAAGACGCTTTCTACGTTGTAAGGAAAGGGGATGTTGTTGGCATCTACAAGTCCTTCAGTGACATCCAACCTTTACTTGCATCTTCTGTGTCTAGTGACCCTGTAAGTATTTACAAAGGGTACTCGTTACCTCAGAAGACTGAGGAGTACCTTGTCTCACATGGGCTCAAGGGAGCCCCTTATTCTATTAGTGCAGCTGATGTGAACGAGGGGCTTTTTGGAAGACTTGTTGCTTGTCCTTATCAGGATCCATATTCATCTGGAGGAAGAGCTTTCAATGTGAGTTCCTCATCAAGAAACTTGCAAGGAGCCATTCAGTTTGACACTGGCAAGCTGGCTGGATCATTTTCATATCCACCAAATTCACTGAGGAATCATACACTAGGTGGATCCCAAGCTGAGTGGTCTTCTTGTCTTTCGTGTACCCTTCATTTTGATGGTGCTTCCAAAGGAAATCCTGGACCTGCTGGTGCAGGAGCTATACTGCATGATGGGAGCAAGGTCTATCGGTTGCGTGAAGGAGTGGGCATTCAAACAAATAATGTTGCGGAGTATCGAAGTTTAATACTAGGATTGAAACATGCCCTTAAGAAAGGTTATAAGCACATTATTGTCCAAGGAGACTCTCTGCTTGTCTGCAATCAGATTCAGGGTTTATGGAAAATCAAAAACCAGAATATGGGTACCTTGTGTGCTGAGGCCAAGGAGCTGAAGGATAAGTTTCTGTCATTCAAGATCAGTCATATTCCTAGGGAATACAACTCTGAAGCTGATGCTCAAGCAAACCTGGCCATAAATCTCAGAGCTTGTGAAGTTCAAGAAGATTGTCAGTTGCTTTAATGCTCAACTTTGGCAGTGCCTAATTATTTGGGACTTGGGACACTGCATGCCACTGATAAAGTACTGTTGGCAATTTCAATTTGTTAGTCAATGTGCTATGACATGTAGCATTAGCTTTAAGACTCAGTGGTACTTAGGATGGTGTTGTCTCAGCTAATGTAACACCGTATTGTAAGTAACCATGCATGTTTCTGAATCTTAGTGTTATCTGTCTTCATTCATTTGCTTTAACTGGTAAAATGAGTGTAGTAACTCGCTGTTATTAGTAAGTAACATGAGTGATGTTGCTTCGTGTCATGATCCCAAAATGAAAATTCCTTTCAAATATATTATTTGTAAATTATGCGTGATTAGTTACTACAAATGAAAATTCTTTTTCTATAAAAAAAGGATAAAATGAGATTTGGCTATTC
Coding sequences of Glyma13g04491
>Glyma13g04491.1   sequence type=CDS   gene model=Glyma13g04491   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGAGGAGAAAGACGCTTTCTACGTTGTAAGGAAAGGGGATGTTGTTGGCATCTACAAGTCCTTCAGTGACATCCAACCTTTACTTGCATCTTCTGTGTCTAGTGACCCTGTAAGTATTTACAAAGGGTACTCGTTACCTCAGAAGACTGAGGAGTACCTTGTCTCACATGGGCTCAAGGGAGCCCCTTATTCTATTAGTGCAGCTGATGTGAACGAGGGGCTTTTTGGAAGACTTGTTGCTTGTCCTTATCAGGATCCATATTCATCTGGAGGAAGAGCTTTCAATGTGAGTTCCTCATCAAGAAACTTGCAAGGAGCCATTCAGTTTGACACTGGCAAGCTGGCTGGATCATTTTCATATCCACCAAATTCACTGAGGAATCATACACTAGGTGGATCCCAAGCTGAGTGGTCTTCTTGTCTTTCGTGTACCCTTCATTTTGATGGTGCTTCCAAAGGAAATCCTGGACCTGCTGGTGCAGGAGCTATACTGCATGATGGGAGCAAGGTCTATCGGTTGCGTGAAGGAGTGGGCATTCAAACAAATAATGTTGCGGAGTATCGAAGTTTAATACTAGGATTGAAACATGCCCTTAAGAAAGGTTATAAGCACATTATTGTCCAAGGAGACTCTCTGCTTGTCTGCAATCAGATTCAGGGTTTATGGAAAATCAAAAACCAGAATATGGGTACCTTGTGTGCTGAGGCCAAGGAGCTGAAGGATAAGTTTCTGTCATTCAAGATCAGTCATATTCCTAGGGAATACAACTCTGAAGCTGATGCTCAAGCAAACCTGGCCATAAATCTCAGAGCTTGTGAAGTTCAAGAAGATTGTCAGTTGCTTTAA

>Glyma13g04491.2   sequence type=CDS   gene model=Glyma13g04491   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGAGGAGAAAGACGCTTTCTACGTTGTAAGGAAAGGGGATGTTGTTGGCATCTACAAGTCCTTCAGTGACATCCAACCTTTACTTGCATCTTCTGTGTCTAGTGACCCTGTAAGTATTTACAAAGGGTACTCGTTACCTCAGAAGACTGAGGAGTACCTTGTCTCACATGGGCTCAAGGGAGCCCCTTATTCTATTAGTGCAGCTGATGTGAACGAGGGGCTTTTTGGAAGACTTGTTGCTTGTCCTTATCAGGATCCATATTCATCTGGAGGAAGAGCTTTCAATGTGAGTTCCTCATCAAGAAACTTGCAAGGAGCCATTCAGTTTGACACTGGCAAGCTGGCTGGATCATTTTCATATCCACCAAATTCACTGAGGAATCATACACTAGGTGGATCCCAAGCTGAGTGGTCTTCTTGTCTTTCGTGTACCCTTCATTTTGATGGTGCTTCCAAAGGAAATCCTGGACCTGCTGGTGCAGGAGCTATACTGCATGATGGGAGCAAGGTCTATCGGTTGCGTGAAGGAGTGGGCATTCAAACAAATAATGTTGCGGAGTATCGAAGTTTAATACTAGGATTGAAACATGCCCTTAAGAAAGGTTATAAGCACATTATTGTCCAAGGAGACTCTCTGCTTGTCTGCAATCAGATTCAGGGTTTATGGAAAATCAAAAACCAGAATATGGGTACCTTGTGTGCTGAGGCCAAGGAGCTGAAGGATAAGTTTCTGTCATTCAAGATCAGTCATATTCCTAGGGAATACAACTCTGAAGCTGATGCTCAAGCAAACCTGGCCATAAATCTCAGAGCTTGTGAAGTTCAAGAAGATTGTCAGTTGCTTTAA

>Glyma13g04491.3   sequence type=CDS   gene model=Glyma13g04491   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGAGGAGAAAGACGCTTTCTACGTTGTAAGGAAAGGGGATGTTGTTGGCATCTACAAGTCCTTCAGTGACATCCAACCTTTACTTGCATCTTCTGTGTCTAGTGACCCTGTAAGTATTTACAAAGGGTACTCGTTACCTCAGAAGACTGAGGAGTACCTTGTCTCACATGGGCTCAAGGGAGCCCCTTATTCTATTAGTGCAGCTGATGTGAACGAGGGGCTTTTTGGAAGACTTGTTGCTTGTCCTTATCAGGATCCATATTCATCTGGAGGAAGAGCTTTCAATGTGAGTTCCTCATCAAGAAACTTGCAAGGAGCCATTCAGTTTGACACTGGCAAGCTGGCTGGATCATTTTCATATCCACCAAATTCACTGAGGAATCATACACTAGGTGGATCCCAAGCTGAGTGGTCTTCTTGTCTTTCGTGTACCCTTCATTTTGATGGTGCTTCCAAAGGAAATCCTGGACCTGCTGGTGCAGGAGCTATACTGCATGATGGGAGCAAGGTCTATCGGTTGCGTGAAGGAGTGGGCATTCAAACAAATAATGTTGCGGAGTATCGAAGTTTAATACTAGGATTGAAACATGCCCTTAAGAAAGGTTATAAGCACATTATTGTCCAAGGAGACTCTCTGCTTGTCTGCAATCAGATTCAGGGTTTATGGAAAATCAAAAACCAGAATATGGGTACCTTGTGTGCTGAGGCCAAGGAGCTGAAGGATAAGTTTCTGTCATTCAAGATCAGTCATATTCCTAGGGAATACAACTCTGAAGCTGATGCTCAAGCAAACCTGGCCATAAATCTCAGAGCTTGTGAAGTTCAAGAAGATTGTCAGTTGCTTTAA
Predicted protein sequences of Glyma13g04491
>Glyma13g04491.1   sequence type=predicted peptide   gene model=Glyma13g04491   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEEKDAFYVVRKGDVVGIYKSFSDIQPLLASSVSSDPVSIYKGYSLPQKTEEYLVSHGLKGAPYSISAADVNEGLFGRLVACPYQDPYSSGGRAFNVSSSSRNLQGAIQFDTGKLAGSFSYPPNSLRNHTLGGSQAEWSSCLSCTLHFDGASKGNPGPAGAGAILHDGSKVYRLREGVGIQTNNVAEYRSLILGLKHALKKGYKHIIVQGDSLLVCNQIQGLWKIKNQNMGTLCAEAKELKDKFLSFKISHIPREYNSEADAQANLAINLRACEVQEDCQLL*

>Glyma13g04491.2   sequence type=predicted peptide   gene model=Glyma13g04491   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEEKDAFYVVRKGDVVGIYKSFSDIQPLLASSVSSDPVSIYKGYSLPQKTEEYLVSHGLKGAPYSISAADVNEGLFGRLVACPYQDPYSSGGRAFNVSSSSRNLQGAIQFDTGKLAGSFSYPPNSLRNHTLGGSQAEWSSCLSCTLHFDGASKGNPGPAGAGAILHDGSKVYRLREGVGIQTNNVAEYRSLILGLKHALKKGYKHIIVQGDSLLVCNQIQGLWKIKNQNMGTLCAEAKELKDKFLSFKISHIPREYNSEADAQANLAINLRACEVQEDCQLL*

>Glyma13g04491.3   sequence type=predicted peptide   gene model=Glyma13g04491   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEEKDAFYVVRKGDVVGIYKSFSDIQPLLASSVSSDPVSIYKGYSLPQKTEEYLVSHGLKGAPYSISAADVNEGLFGRLVACPYQDPYSSGGRAFNVSSSSRNLQGAIQFDTGKLAGSFSYPPNSLRNHTLGGSQAEWSSCLSCTLHFDGASKGNPGPAGAGAILHDGSKVYRLREGVGIQTNNVAEYRSLILGLKHALKKGYKHIIVQGDSLLVCNQIQGLWKIKNQNMGTLCAEAKELKDKFLSFKISHIPREYNSEADAQANLAINLRACEVQEDCQLL*






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