Glyma13g04460 - SoyBase

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Report for Sequence Feature Glyma13g04460

Feature Type:	gene_model
Chromosome:	Gm13
Start:	4796760
stop:	4802079
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g04460

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G38490	AT	Annotation by Michelle Graham. TAIR10: unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). \| chr4:18006385-18007203 FORWARD LENGTH=153	SoyBase	E_val: 1.00E-29	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
PF00584	PFAM	SecE/Sec61-gamma subunits of protein translocation complex	JGI		ISS
UniRef100_I1LWE0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LWE0_SOYBN	SoyBase	E_val: 2.00E-109	ISS

Expression Patterns of Glyma13g04460

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g04460 not represented in the dataset	Glyma13g04460 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g04460

Paralog	Evidence	Comments
Glyma19g01550	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g04460 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g070400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g04460

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g04460

Limit To All Plant Sequences

>Glyma13g04460.2   sequence type=transcript   gene model=Glyma13g04460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAAGGTTTTGATTTTGAGATGAATGATGAATCGATGATGCATAAACCTTTATTAATAACTAAGTTGGGTTATGCAGGTTTCCATGCATTGAATTGGTCATGATTGTTTAACAAATATTTGAGTCTCAAAATGGTGATTCTTTGCTCGTTGCCACTGAACTATTCAGCTTTCCTTTGTCAAGGTACTCCTTTTCTGCCATCAAAGTTTCCAGCAAGAGTTGATTATCACAGAGATGTTTCTCTGACATCACAAACGATTTTTAGAATAAAAATAAGAGAAAAACATGCAAACCATAGTTGCACCAAATTTGTGACGTCTGCTGCAAGGAATGATCATCATCTAAGCTACGATGATGATTTACCTCAGGAGCCCTTTTTGCTAACATTGATCAAGGATGTCATATGGTATTTACAAAACTTCAACTTGTCATCAAATTGCATTAGTGTAATGAGACACTAGCTGTGTGAACTGAAACTATTTTTATTTTAATTAAAGACTAGCAGAATTCACTTATGAATTTTATAGAAAAATACAATCATTGCTAGTAAACCATCTGTTCTTTTTCAGGGGGCTAAGATATATATTTGTATTTTTGGTTGAGCAACCTGGCCAGTTTAAATACATAGAGTGGCCAAGCTTTAGTAGTACGCTGAGGACTGCGATTCTGACTCTTATACTTGTTGCAATGCTTATTGTTGCATTATCATCTGTTGATTCGGCTCTCAGCTATCTATTGGCTTTAGCTCTTCGGAAAAGACCATAACCGTGTGGTGTGCCTATGTCACCATGTGTAAGCAGTTGATTTCTGATGCTTGTAATTTGTTTAGCTCTATCCTCATATACGTGTAAATCATGACTTGTATTTTGAACTGGAAAGGATAAAGCTATTTAAGAACCTTTTATTGAAGCCGTTGATTTGCAACTCAGTGAAGGAAATGGTTGCATAGCATAGAATCTTGTTAATTACATGGAAGGCAACTGGGTATTTCAGTATAACAATAGTCAACTATAAATCAATTATAGATAACTAATGAAAGCAG

>Glyma13g04460.3   sequence type=transcript   gene model=Glyma13g04460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TATAAAGATGAAAAAAAAGCACAAAAACATATCTAAACCAATTTTAACATTCCTAATCATTTCCTTTCCTCACCCGGAACGAAACGCGAGTGTAGTTGTCGCCTCGGTAGAACAAGTTTAACCGTTGTGGTTGTTCGCCGTAGGCGTTCCTAGCATCCTCTCAGCCATTTCCGACACCGTCAGGTTTCCATGCATTGAATTGGTCATGATTGTTTAACAAATATTTGAGTCTCAAAATGGTGATTCTTTGCTCGTTGCCACTGAACTATTCAGGTACTCCTTTTCTGCCATCAAAGTTTCCAGCAAGAGTTGATTATCACAGAGATGTTTCTCTGACATCACAAACGATTTTTAGAATAAAAATAAGAGAAAAACATGCAAACCATAGTTGCACCAAATTTGTGACGTCTGCTGCAAGGAATGATCATCATCTAAGCTACGATGATGATTTACCTCAGGAGCCCTTTTTGCTAACATTGATCAAGGATGTCATATGGGGGCTAAGATATATATTTGTATTTTTGGTTGAGCAACCTGGCCAGTTTAAATACATAGAGTGGCCAAGCTTTAGTAGTACGCTGAGGACTGCGATTCTGACTCTTATACTTGTTGCAATGCTTATTGTTGCATTATCATCTGTTGATTCGGCTCTCAGCTATCTATTGGCTTTAGCTCTTCGGAAAAGACCATAACCGTGTGGTGTGCCTATGTCACCATGTGTAAGCAGTTGATTTCTGATGCTTGTAATTTGTTTAGCTCTATCCTCATATACGTGTAAATCATGACTTGTATTTTGAACTGGAAAGGATAAAGCTATTTAAGAACCTTTTATTGAAGCCGTTGATTTGCAACTCAGTGAAGGAAATGGTTGCATAGCATAGAATCTTGTTAATTACATGGAAGGCAACTGGGTATTTCAGTATAACAATAGTCAACTATAAATCAATTATAGATAACTAATGAAAGCAG

Coding sequences of Glyma13g04460

Limit To All Plant Sequences

>Glyma13g04460.1   sequence type=CDS   gene model=Glyma13g04460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGATTCTTTGCTCGTTGCCACTGAACTATTCAGCTTTCCTTTGTCAAGGTACTCCTTTTCTGCCATCAAAGTTTCCAGCAAGAGTTGATTATCACAGAGATGTTTCTCTGACATCACAAACGATTTTTAGAATAAAAATAAGAGAAAAACATGCAAACCATAGTTGCACCAAATTTGTGACGTCTGCTGCAAGGAATGATCATCATCTAAGCTACGATGATGATTTACCTCAGGAGCCCTTTTTGCTAACATTGATCAAGGATGTCATATGGGGGCTAAGATATATATTTGTATTTTTGGTTGAGCAACCTGGCCAGTTTAAATACATAGAGTGGCCAAGCTTTAGTAGTACGCTGAGGACTGCGATTCTGACTCTTATACTTGTTGCAATGCTTATTGTTGCATTATCATCTGTTGATTCGGCTCTCAGCTATCTATTGGCTTTAGCTCTTCGGAAAAGACCATAA

>Glyma13g04460.2   sequence type=CDS   gene model=Glyma13g04460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGATTCTTTGCTCGTTGCCACTGAACTATTCAGCTTTCCTTTGTCAAGGTACTCCTTTTCTGCCATCAAAGTTTCCAGCAAGAGTTGATTATCACAGAGATGTTTCTCTGACATCACAAACGATTTTTAGAATAAAAATAAGAGAAAAACATGCAAACCATAGTTGCACCAAATTTGTGACGTCTGCTGCAAGGAATGATCATCATCTAAGCTACGATGATGATTTACCTCAGGAGCCCTTTTTGCTAACATTGATCAAGGATGTCATATGGTATTTACAAAACTTCAACTTGTCATCAAATTGCATTAGTGTAATGAGACACTAG

>Glyma13g04460.3   sequence type=CDS   gene model=Glyma13g04460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGATTCTTTGCTCGTTGCCACTGAACTATTCAGGTACTCCTTTTCTGCCATCAAAGTTTCCAGCAAGAGTTGATTATCACAGAGATGTTTCTCTGACATCACAAACGATTTTTAGAATAAAAATAAGAGAAAAACATGCAAACCATAGTTGCACCAAATTTGTGACGTCTGCTGCAAGGAATGATCATCATCTAAGCTACGATGATGATTTACCTCAGGAGCCCTTTTTGCTAACATTGATCAAGGATGTCATATGGGGGCTAAGATATATATTTGTATTTTTGGTTGAGCAACCTGGCCAGTTTAAATACATAGAGTGGCCAAGCTTTAGTAGTACGCTGAGGACTGCGATTCTGACTCTTATACTTGTTGCAATGCTTATTGTTGCATTATCATCTGTTGATTCGGCTCTCAGCTATCTATTGGCTTTAGCTCTTCGGAAAAGACCATAA

Predicted protein sequences of Glyma13g04460

Limit To All Plant Sequences

>Glyma13g04460.1   sequence type=predicted peptide   gene model=Glyma13g04460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVILCSLPLNYSAFLCQGTPFLPSKFPARVDYHRDVSLTSQTIFRIKIREKHANHSCTKFVTSAARNDHHLSYDDDLPQEPFLLTLIKDVIWGLRYIFVFLVEQPGQFKYIEWPSFSSTLRTAILTLILVAMLIVALSSVDSALSYLLALALRKRP*

>Glyma13g04460.2   sequence type=predicted peptide   gene model=Glyma13g04460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVILCSLPLNYSAFLCQGTPFLPSKFPARVDYHRDVSLTSQTIFRIKIREKHANHSCTKFVTSAARNDHHLSYDDDLPQEPFLLTLIKDVIWYLQNFNLSSNCISVMRH*

>Glyma13g04460.3   sequence type=predicted peptide   gene model=Glyma13g04460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVILCSLPLNYSGTPFLPSKFPARVDYHRDVSLTSQTIFRIKIREKHANHSCTKFVTSAARNDHHLSYDDDLPQEPFLLTLIKDVIWGLRYIFVFLVEQPGQFKYIEWPSFSSTLRTAILTLILVAMLIVALSSVDSALSYLLALALRKRP*

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