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Report for Sequence Feature Glyma13g04350

Feature Type:gene_model
Chromosome:Gm13
Start:4695532
stop:4696643
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G10250AT Annotation by Michelle Graham. TAIR10: HSP20-like chaperones superfamily protein | chr4:6370537-6371124 FORWARD LENGTH=195 SoyBaseE_val: 1.00E-45ISS
GO:0006457GO-bp Annotation by Michelle Graham. GO Biological Process: protein folding SoyBaseN/AISS
GO:0009408GO-bp Annotation by Michelle Graham. GO Biological Process: response to heat SoyBaseN/AISS
GO:0009644GO-bp Annotation by Michelle Graham. GO Biological Process: response to high light intensity SoyBaseN/AISS
GO:0042542GO-bp Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide SoyBaseN/AISS
GO:0005783GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG0710 KOG Molecular chaperone (small heat-shock protein Hsp26/Hsp42) JGI ISS
PTHR11527Panther SMALL HEAT-SHOCK PROTEIN (HSP20) FAMILY JGI ISS
PTHR11527:SF14Panther LETHAL(2) ESSENTIAL FOR LIFE - RELATED JGI ISS
PF00011PFAM Hsp20/alpha crystallin family JGI ISS
UniRef100_I1LWD4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LWD4_SOYBN SoyBaseE_val: 5.00E-118ISS
UniRef100_Q39819UniRef Annotation by Michelle Graham. Most informative UniRef hit: Hsp22.3 n=1 Tax=Glycine max RepID=Q39819_SOYBN SoyBaseE_val: 8.00E-87ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma19g01440 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g071400 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma13g04350.2   sequence type=CDS   gene model=Glyma13g04350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTCGCACACTCACAACTGCAGCAACGTGTCTTCTTCTCTCATTATTATTAGTGTCCCTCTGTGTGACCACCACCACCAACGCCCTAATGCCATACACACGTAGCAGCACCCTCTGGGACACGATGCTCTCATCAGAGGACCCGTTCAGAATCCTGGAACACACCCCATTCAGCGACATTCCCACCACCACCAGAGGAGTGGACACTCTCGCCCTGGCACGTGCGGACTGGAAGGAGACCCCTACCGCTCACGTGATAGCGCTGGACCTTCCCGGCATGAAGAAGGAGGACGTGAAGATCGAGGTGGAGGAGAATCGCGTGCTGCGAATCAGCGGCGAGAGGAAGGGAGAAGAAGAAGAGGTTGAGGGAGAGAAGTGGCACAGGGCGGAGAGGACTAACGGAAAGTTCTGGAGACAGTTCCGGTTGCCGCTGAATGCGGATTTGGAGAAGGTTACGGCGAGGCTTGAAGATGGGGTGCTGAGGATCACGGTGGCCAAGTTGGGTGAGGATAAGAAGAGGCAGCCTAAGGTTATTGACATTGCTCAGAGGGATTCTGCTGCTGAAGATGTTAAGGCTACCAAGGCTGATATGTAA

>Glyma13g04350.2   sequence type=predicted peptide   gene model=Glyma13g04350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRTLTTAATCLLLSLLLVSLCVTTTTNALMPYTRSSTLWDTMLSSEDPFRILEHTPFSDIPTTTRGVDTLALARADWKETPTAHVIALDLPGMKKEDVKIEVEENRVLRISGERKGEEEEVEGEKWHRAERTNGKFWRQFRLPLNADLEKVTARLEDGVLRITVAKLGEDKKRQPKVIDIAQRDSAAEDVKATKADM*







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