Glyma13g04350 - SoyBase

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Report for Sequence Feature Glyma13g04350

Feature Type:	gene_model
Chromosome:	Gm13
Start:	4695532
stop:	4696643
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g04350

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G10250	AT	Annotation by Michelle Graham. TAIR10: HSP20-like chaperones superfamily protein \| chr4:6370537-6371124 FORWARD LENGTH=195	SoyBase	E_val: 1.00E-45	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0009408	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to heat	SoyBase	N/A	ISS
GO:0009644	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to high light intensity	SoyBase	N/A	ISS
GO:0042542	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG0710	KOG	Molecular chaperone (small heat-shock protein Hsp26/Hsp42)	JGI		ISS
PTHR11527	Panther	SMALL HEAT-SHOCK PROTEIN (HSP20) FAMILY	JGI		ISS
PTHR11527:SF14	Panther	LETHAL(2) ESSENTIAL FOR LIFE - RELATED	JGI		ISS
PF00011	PFAM	Hsp20/alpha crystallin family	JGI		ISS
UniRef100_I1LWD4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LWD4_SOYBN	SoyBase	E_val: 5.00E-118	ISS
UniRef100_Q39819	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Hsp22.3 n=1 Tax=Glycine max RepID=Q39819_SOYBN	SoyBase	E_val: 8.00E-87	ISS

Expression Patterns of Glyma13g04350

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g04350

Paralog	Evidence	Comments
Glyma19g01440	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g04350 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g071400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g04350

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g04350

Limit To All Plant Sequences

>Glyma13g04350.2   sequence type=CDS   gene model=Glyma13g04350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTCGCACACTCACAACTGCAGCAACGTGTCTTCTTCTCTCATTATTATTAGTGTCCCTCTGTGTGACCACCACCACCAACGCCCTAATGCCATACACACGTAGCAGCACCCTCTGGGACACGATGCTCTCATCAGAGGACCCGTTCAGAATCCTGGAACACACCCCATTCAGCGACATTCCCACCACCACCAGAGGAGTGGACACTCTCGCCCTGGCACGTGCGGACTGGAAGGAGACCCCTACCGCTCACGTGATAGCGCTGGACCTTCCCGGCATGAAGAAGGAGGACGTGAAGATCGAGGTGGAGGAGAATCGCGTGCTGCGAATCAGCGGCGAGAGGAAGGGAGAAGAAGAAGAGGTTGAGGGAGAGAAGTGGCACAGGGCGGAGAGGACTAACGGAAAGTTCTGGAGACAGTTCCGGTTGCCGCTGAATGCGGATTTGGAGAAGGTTACGGCGAGGCTTGAAGATGGGGTGCTGAGGATCACGGTGGCCAAGTTGGGTGAGGATAAGAAGAGGCAGCCTAAGGTTATTGACATTGCTCAGAGGGATTCTGCTGCTGAAGATGTTAAGGCTACCAAGGCTGATATGTAA

Predicted protein sequences of Glyma13g04350

Limit To All Plant Sequences

>Glyma13g04350.2   sequence type=predicted peptide   gene model=Glyma13g04350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRTLTTAATCLLLSLLLVSLCVTTTTNALMPYTRSSTLWDTMLSSEDPFRILEHTPFSDIPTTTRGVDTLALARADWKETPTAHVIALDLPGMKKEDVKIEVEENRVLRISGERKGEEEEVEGEKWHRAERTNGKFWRQFRLPLNADLEKVTARLEDGVLRITVAKLGEDKKRQPKVIDIAQRDSAAEDVKATKADM*

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