Glyma13g04330 - SoyBase

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Report for Sequence Feature Glyma13g04330

Feature Type:	gene_model
Chromosome:	Gm13
Start:	4685095
stop:	4687834
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g04330

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G40250	AT	Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein \| chr5:16086056-16087186 FORWARD LENGTH=376	SoyBase	E_val: 1.00E-141	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG1493	KOG	Anaphase-promoting complex (APC), subunit 11	JGI		ISS
PTHR14155	Panther	RING FINGER PROTEIN 6/12/38	JGI		ISS
PTHR14155:SF26	Panther	OS08G0445000 PROTEIN	JGI		ISS
PF00097	PFAM	Zinc finger, C3HC4 type (RING finger)	JGI		ISS
UniRef100_C6EUD3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RING finger protein n=1 Tax=Glycine max RepID=C6EUD3_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1LWD3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LWD3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g04330

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g04330

Paralog	Evidence	Comments
Glyma19g01420	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g04330 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g071600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g04330

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g04330

Limit To All Plant Sequences

>Glyma13g04330.1   sequence type=CDS   gene model=Glyma13g04330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAGAAAACATGTATCCTAGGTTGTTGTTTTTTGACCATACCCATTCGAAGATGGTATGGGTTAAGCATCAAATCCAGCAAAAAGATGGTTACTTGAGCTACTCACCACCCCTTTTGTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCACCCCCTTACCCTCTTGGTGCTACTTTCCACAAGGAATCATCATTGCCTTCTTCAACACCACCACCACCACCATCTGGCACCAGAATTAGTCCTGCTGTTCTTTTCATCATAGTGGTTCTTGCTGTTTTGTTTTTCATCTCTGGCCTCCTCCACCTGCTTATTAGATTTCTCATAAAACACCCTTCTTCTGCATCTGCTCAATCCAACAGACACCAAGAACTTTCCACATCTGATGCACTCCAGAGGCAGCTTCAGCAGCTCTTCCACCTCCATGACTCTGGCTTGGATCAGGCTTTCATTGATGCTCTTCCTGTTTTCCAGTACAAGGAGATTGTGGGGTTGAAGGAGCCCTTTGACTGTGCTGTCTGCTTGTGTGAGTTTTCTGAGAAGGATAAGCTCAGGTTGTTGCCTATGTGCAGCCATGCCTTTCACATCAGTTGTATAGACACATGGCTTTTGTCAAACTCCACATGCCCTCTTTGTAGAGGAACACTTCTCACTCAAGGGTTTTCCATTGAGAACCCTATATTTGACTTTGATGATCTGAGGGAGGATGAAGGGTGCCCTTGTAATGGGGAGAATGGATTCAATACTAGGCAGAAAACAGTTGTGGTTGAAGAAAGTGTGGAGAAAGAGAAAGGTGTTTTCCCTGTGAGGCTTGGGAAATTCAAGAAGCTGAGTGTGAAGGGGGGTGGGGAGAGTGAAGTGGGAGAGACAAGTAGTAGTAATTTGGATGCAAGAAGGTGTTACTCAATGGGGTCTTACCAATATGTGGTTGGGAATTCAGACCTAAGGGTGACTTTGAACCATGATGAAATTGGTAAAGGTCAAGTCACAAGGCTCACCAAAGGAATGGAACTTGATGATGGGAAGGTTTCAGTGGAGGAGGGGGATGTGGAAGCAAAGAAGATTAGTAGTGTCAGTAAAGGTGACAGCTTTTCTGTGTCCAAAATCTGGTTGTGGCCAAAGAAGGGGAAATTGCCTACTTCTTTGGATGGTCAATTTGGCAGGCCAATGCCTTCTTATCTAAACACAGATTTTCCAAGGATGAGGGAACCAGAAGGGGCATGA

Predicted protein sequences of Glyma13g04330

Limit To All Plant Sequences

>Glyma13g04330.1   sequence type=predicted peptide   gene model=Glyma13g04330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSENMYPRLLFFDHTHSKMVWVKHQIQQKDGYLSYSPPLLSSSSSSSSSSSSSSPPYPLGATFHKESSLPSSTPPPPPSGTRISPAVLFIIVVLAVLFFISGLLHLLIRFLIKHPSSASAQSNRHQELSTSDALQRQLQQLFHLHDSGLDQAFIDALPVFQYKEIVGLKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHISCIDTWLLSNSTCPLCRGTLLTQGFSIENPIFDFDDLREDEGCPCNGENGFNTRQKTVVVEESVEKEKGVFPVRLGKFKKLSVKGGGESEVGETSSSNLDARRCYSMGSYQYVVGNSDLRVTLNHDEIGKGQVTRLTKGMELDDGKVSVEEGDVEAKKISSVSKGDSFSVSKIWLWPKKGKLPTSLDGQFGRPMPSYLNTDFPRMREPEGA*

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