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Report for Sequence Feature Glyma13g04221

Feature Type:gene_model
Chromosome:Gm13
Start:4562881
stop:4566145
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g04221
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G19070AT Annotation by Michelle Graham. TAIR10: spermidine hydroxycinnamoyl transferase | chr2:8260185-8261958 REVERSE LENGTH=451 SoyBaseE_val: 4.00E-60ISS
GO:0009555GO-bp Annotation by Michelle Graham. GO Biological Process: pollen development SoyBaseN/AISS
GO:0010584GO-bp Annotation by Michelle Graham. GO Biological Process: pollen exine formation SoyBaseN/AISS
GO:0080088GO-bp Annotation by Michelle Graham. GO Biological Process: spermidine hydroxycinnamate conjugate biosynthetic process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0016410GO-mf Annotation by Michelle Graham. GO Molecular Function: N-acyltransferase activity SoyBaseN/AISS
GO:0016747GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups SoyBaseN/AISS
GO:0050734GO-mf Annotation by Michelle Graham. GO Molecular Function: hydroxycinnamoyltransferase activity SoyBaseN/AISS
GO:0080072GO-mf Annotation by Michelle Graham. GO Molecular Function: spermidine:sinapoyl CoA N-acyltransferase activity SoyBaseN/AISS
GO:0080073GO-mf Annotation by Michelle Graham. GO Molecular Function: spermidine:coumaroyl CoA N-acyltransferase activity SoyBaseN/AISS
GO:0080074GO-mf Annotation by Michelle Graham. GO Molecular Function: spermidine:caffeoyl CoA N-acyltransferase activity SoyBaseN/AISS
GO:0080075GO-mf Annotation by Michelle Graham. GO Molecular Function: spermidine:feruloyl CoA N-acyltransferase activity SoyBaseN/AISS
PF02458PFAM Transferase family JGI ISS
UniRef100_B6D7P2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Malate O-hydroxycinnamoyl transferase n=1 Tax=Trifolium pratense RepID=B6D7P2_TRIPR SoyBaseE_val: 4.00E-89ISS
UniRef100_UPI000233BF4AUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233BF4A related cluster n=1 Tax=unknown RepID=UPI000233BF4A SoyBaseE_val: 0ISS

Expression Patterns of Glyma13g04221
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g04221 not represented in the dataset
Glyma13g04221 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g04221
ParalogEvidenceComments
Glyma20g08830 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g04221 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g072000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g04221
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma13g04221
>Glyma13g04221.2   sequence type=transcript   gene model=Glyma13g04221   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATTTTGTTCTATATATATGTCCATGGAAGCTGTGAATCACACAATAGCATATATCATAAGATATACAAACCTCTCAAGAATGTCAACCGTCACTGCTTCTTACAATGTCACTCCCAATGAGCCAACTCCAAACGTTTCTATGGGGCTGTCCGAGAGTGACCAAGTGGTACGTTGGACTCACGCCCCAACCATTTACATTTACAAAGAAAACCAAACCCAAAACGCCCTTGAAAGAATGAGAGATTCTCTAAGCAGAATTCTAGTGCACTACTACCCTTTGGCCGGTCGATTGACTTGGATAGAGGGTGGTAGAGTAGCACTGAATTGCAATACAAAGGGAGTGACACTGATCGAAGCCGAATCTCCAAAAACAATGGATGATTATGGCGATATTACCACGAACGAAAAACTGATGAGTGAACTCATTCCTATGGTTGATTATTCTCAACCCATTGAGGAGCTTCCCTTGTTGCTTGTTCAATTGACAAGGCTCAAAGGAAGCAGCAACCAAGGCCTTGCAATTGGAGTGGCTATTAGCCATGTTTTGTGTGATGGGGTAGCAGCCATTACATTCATCAATGCATGGGCAAAGCTTACTAGAGGGGAAGCTTTGGACTCAATTGAAATGTTTCCATTTCTTGATAGAACAATCATCAATTCCACATACCCACCAAGGACTCCACGTTTTGATCACCCTGCGTTGAAGCCTCTACCTCTCAAACTAGGCAGCACTGACACCAAAGAAGAACAGGAAAAGGAGAAAACTTCTATGATGTTGAGACTCACATCACAGCAAGTTGAGAAATTGAAGAAGAAAGCCAATGATGAACGACCTAAAAAAGATGAAATGTCACGACCATATAGTAGATACGAAGTCATGGAGATGTGCATCAAAGGCACGTGAGCTAGAAGATCTTCAACCAACCGTGGTAAGGGTACCTGTGGACATTCGCAATAGGCTGAACCCACCCCTCCCAAGAAACTACTTTGGCAACGCATTGGCCGCGGCATTGACACCAAAATGCCTCACTAAGGAACTCATAACCAACCCATTAAGACTCTCATTCCTTATCGAACTCATAATTACTATATATATTTTATAAATATTCTTTAAGACTCTCATTCCTAAAAACCTAATTTAGTTTTCAACAAAAAAAAATAATAATTTAGTGAGAATAAAAAAATCCTGATATTAAGTGTCACCTTAAATAAAAATACCATTTAACCTTTTTATTTAATTTTAAATGATTTTAAAAAATCATGAAAAGATTTAATATTATTTTATTGGTAAAATATTTTTTTCCTCTAGATTTTTTCAAATTAGGTTTTAAACCTCCAAAAATTGTCTCTCTAGTTTAAAAATACTCTACTTTTGATCCATACAATGTATTTTCTAATGGTTTGTAAATGTTATTAGGTGTTAATTATAACTACTTCGAGGACCAAAATTGAAATTTTTTTAAATTAGAGGGGCATAAATATGATGAAATTTTTGGGTGACTAATTAAATCCAATTTGAAATTTTTAAGGGGGATAAAATATATTTTTTATCCTAACTTTTTTTATTTGCATAAGACAATAATAATTTATTTGCATAAGACATAGATTAAATAAAATATAATTGGAAAACCTTTTTTTTAGGTGTGTTTTAAGGTAAATATCAATTTCATACTCAAATAGTTGATATTCTTTCTAAAATAATATCAACTCAAGTGCATCTGTTTCAGTGTAAATATCAACTTTATACTTGATCAACCGACATTGTCTCTTTGAGATAATATCGATTCGGGCGCAACCGTTCTAGAATAAATATCAACTTCACATGTCATGAATGCGTAACACACAACCTAATACATTATGAACAACTTAAAGATCATGTTGAGTACAAATCTAAACGGTTGAAGTAAAAAGCATCTTAGTAACAATTAATTGAGGACAAGTCTCATGTAACCTTCAAGATAAGATATCTAACACAATAAATATTTGTAATAAGTCATGTGACTGATAATGTCACGTAAACAAACATTATAAATAGATACTTTGTAATCACATCAAAGAAAGATACACATAACAAAACTCAATACTATTAGACTTCTTCAAAGATCTTTCTCTAAATTCTCTTTGATTCTCTTATTTTCTCTAAGTCTATTTCACGCTAGATGATCCAAATCACCTTTTGTGTCCTACACCATAACAACTTGCATGTATTACATTTAAACATATAATTTGTTTTTAAATTATCTTCATCAAAATTTAAATAAAAATACACTTGATCAATTCGGAGTTTGTTTTATTACTTGAAAAGCAATGTTTAGAAAAAAGGCGTTATATACATAGGGTGAGCATTTGAGACATTGGTTACCCAACATAGAACATGTGACTCTACGTCTTAAACAACATCCCCTTTGTTCATCTTGCATCTTGGAAGCTCAACTACAAGAGATTTTATTCATTTTCAAAATCCTAGCATGTGTCTGAACTCTTCCTAGCATTTGTGTGTTTAGCTTCCAAGTAATTTGTCTTCATTTTGTTACTTGATGACGGATGCTCCCCAGTGTGTCAAATGCTACTTCAAAAGTGTATGTGCTTTGCTTTAATTTTTTACAAAATAAAAGAAATACCTTAATTATGTATGTATTTAAT
Coding sequences of Glyma13g04221
>Glyma13g04221.1   sequence type=CDS   gene model=Glyma13g04221   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCATGGAAGCTGTGAATCACACAATAGCATATATCATAAGATATACAAACCTCTCAAGAATGTCAACCGTCACTGCTTCTTACAATGTCACTCCCAATGAGCCAACTCCAAACGTTTCTATGGGGCTGTCCGAGAGTGACCAAGTGGTACGTTGGACTCACGCCCCAACCATTTACATTTACAAAGAAAACCAAACCCAAAACGCCCTTGAAAGAATGAGAGATTCTCTAAGCAGAATTCTAGTGCACTACTACCCTTTGGCCGGTCGATTGACTTGGATAGAGGGTGGTAGAGTAGCACTGAATTGCAATACAAAGGGAGTGACACTGATCGAAGCCGAATCTCCAAAAACAATGGATGATTATGGCGATATTACCACGAACGAAAAACTGATGAGTGAACTCATTCCTATGGTTGATTATTCTCAACCCATTGAGGAGCTTCCCTTGTTGCTTGTTCAATTGACAAGGCTCAAAGGAAGCAGCAACCAAGGCCTTGCAATTGGAGTGGCTATTAGCCATGTTTTGTGTGATGGGGTAGCAGCCATTACATTCATCAATGCATGGGCAAAGCTTACTAGAGGGGAAGCTTTGGACTCAATTGAAATGTTTCCATTTCTTGATAGAACAATCATCAATTCCACATACCCACCAAGGACTCCACGTTTTGATCACCCTGCGTTGAAGCCTCTACCTCTCAAACTAGGCAGCACTGACACCAAAGAAGAACAGGAAAAGGAGAAAACTTCTATGATGTTGAGACTCACATCACAGCAAGTTGAGAAATTGAAGAAGAAAGCCAATGATGAACGACCTAAAAAAGATGGTATTACGAAAATGTCACGACCATATAGTAGATACGAAGTCATGGAGATGTGCATCAAAGGCACGTGA

>Glyma13g04221.2   sequence type=CDS   gene model=Glyma13g04221   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCATGGAAGCTGTGAATCACACAATAGCATATATCATAAGATATACAAACCTCTCAAGAATGTCAACCGTCACTGCTTCTTACAATGTCACTCCCAATGAGCCAACTCCAAACGTTTCTATGGGGCTGTCCGAGAGTGACCAAGTGGTACGTTGGACTCACGCCCCAACCATTTACATTTACAAAGAAAACCAAACCCAAAACGCCCTTGAAAGAATGAGAGATTCTCTAAGCAGAATTCTAGTGCACTACTACCCTTTGGCCGGTCGATTGACTTGGATAGAGGGTGGTAGAGTAGCACTGAATTGCAATACAAAGGGAGTGACACTGATCGAAGCCGAATCTCCAAAAACAATGGATGATTATGGCGATATTACCACGAACGAAAAACTGATGAGTGAACTCATTCCTATGGTTGATTATTCTCAACCCATTGAGGAGCTTCCCTTGTTGCTTGTTCAATTGACAAGGCTCAAAGGAAGCAGCAACCAAGGCCTTGCAATTGGAGTGGCTATTAGCCATGTTTTGTGTGATGGGGTAGCAGCCATTACATTCATCAATGCATGGGCAAAGCTTACTAGAGGGGAAGCTTTGGACTCAATTGAAATGTTTCCATTTCTTGATAGAACAATCATCAATTCCACATACCCACCAAGGACTCCACGTTTTGATCACCCTGCGTTGAAGCCTCTACCTCTCAAACTAGGCAGCACTGACACCAAAGAAGAACAGGAAAAGGAGAAAACTTCTATGATGTTGAGACTCACATCACAGCAAGTTGAGAAATTGAAGAAGAAAGCCAATGATGAACGACCTAAAAAAGATGAAATGTCACGACCATATAGTAGATACGAAGTCATGGAGATGTGCATCAAAGGCACGTGA
Predicted protein sequences of Glyma13g04221
>Glyma13g04221.1   sequence type=predicted peptide   gene model=Glyma13g04221   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSMEAVNHTIAYIIRYTNLSRMSTVTASYNVTPNEPTPNVSMGLSESDQVVRWTHAPTIYIYKENQTQNALERMRDSLSRILVHYYPLAGRLTWIEGGRVALNCNTKGVTLIEAESPKTMDDYGDITTNEKLMSELIPMVDYSQPIEELPLLLVQLTRLKGSSNQGLAIGVAISHVLCDGVAAITFINAWAKLTRGEALDSIEMFPFLDRTIINSTYPPRTPRFDHPALKPLPLKLGSTDTKEEQEKEKTSMMLRLTSQQVEKLKKKANDERPKKDGITKMSRPYSRYEVMEMCIKGT*

>Glyma13g04221.2   sequence type=predicted peptide   gene model=Glyma13g04221   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSMEAVNHTIAYIIRYTNLSRMSTVTASYNVTPNEPTPNVSMGLSESDQVVRWTHAPTIYIYKENQTQNALERMRDSLSRILVHYYPLAGRLTWIEGGRVALNCNTKGVTLIEAESPKTMDDYGDITTNEKLMSELIPMVDYSQPIEELPLLLVQLTRLKGSSNQGLAIGVAISHVLCDGVAAITFINAWAKLTRGEALDSIEMFPFLDRTIINSTYPPRTPRFDHPALKPLPLKLGSTDTKEEQEKEKTSMMLRLTSQQVEKLKKKANDERPKKDEMSRPYSRYEVMEMCIKGT*






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