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Report for Sequence Feature Glyma13g04190

Feature Type:gene_model
Chromosome:Gm13
Start:4543314
stop:4545271
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g04190
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G79690AT Annotation by Michelle Graham. TAIR10: nudix hydrolase homolog 3 | chr1:29985360-29990171 FORWARD LENGTH=772 SoyBaseE_val: 5.00E-53ISS
GO:0006508GO-bp Annotation by Michelle Graham. GO Biological Process: proteolysis SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0008239GO-mf Annotation by Michelle Graham. GO Molecular Function: dipeptidyl-peptidase activity SoyBaseN/AISS
GO:0016787GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity SoyBaseN/AISS
PTHR23422Panther DIPEPTIDYL PEPTIDASE III-RELATED JGI ISS
PTHR23422:SF4Panther NUDIX HYDROLASE-RELATED JGI ISS
UniRef100_I1LWC8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LWC8_SOYBN SoyBaseE_val: 2.00E-80ISS
UniRef100_Q6K683UniRef Annotation by Michelle Graham. Most informative UniRef hit: MutT/nudix protein-like n=1 Tax=Oryza sativa Japonica Group RepID=Q6K683_ORYSJ SoyBaseE_val: 9.00E-51ISS

Expression Patterns of Glyma13g04190
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g04190 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g072300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g04190
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g04190
>Glyma13g04190.1   sequence type=CDS   gene model=Glyma13g04190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATGTTTCTTTTCTTGCGGGATGCTTCCGGTCAGTGCGTTTTGGTTTAGAGGAAGCTCATGGAAAAGGACAAGCATTGCAGTTCAACTGGTTATATGAGAAAGGAGCCTTTGTCTGGGATTCTGAAGGCAAAGTCTCTGTTGATTTTACCAAGATTGAAGGAGCAGTTGAAAGCCTGAGCAGGGAGATACTCACCATACAAGCCAATGGTGATAAAGAGACTGCTGGTTTGCTTCTCCTGAAATACTGTGTGTTGACAGAACCACTAAAAGTTGCTCTAAAAAATTTGGAGGATATTCAGGTACCTGTTGATGTAGCTCCGACATTTCCCATTGGCAACAAAATATTGCAATGA
Predicted protein sequences of Glyma13g04190
>Glyma13g04190.1   sequence type=predicted peptide   gene model=Glyma13g04190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYVSFLAGCFRSVRFGLEEAHGKGQALQFNWLYEKGAFVWDSEGKVSVDFTKIEGAVESLSREILTIQANGDKETAGLLLLKYCVLTEPLKVALKNLEDIQVPVDVAPTFPIGNKILQ*






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