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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G79690 | AT | Annotation by Michelle Graham. TAIR10: nudix hydrolase homolog 3 | chr1:29985360-29990171 FORWARD LENGTH=772 | SoyBase | E_val: 0 | ISS |
| GO:0006508 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteolysis | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0008239 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: dipeptidyl-peptidase activity | SoyBase | N/A | ISS |
| GO:0016787 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity | SoyBase | N/A | ISS |
| PTHR23422 | Panther | DIPEPTIDYL PEPTIDASE III-RELATED | JGI | ISS | |
| PTHR23422:SF4 | Panther | NUDIX HYDROLASE-RELATED | JGI | ISS | |
| PF00293 | PFAM | NUDIX domain | JGI | ISS | |
| PF03571 | PFAM | Peptidase family M49 | JGI | ISS | |
| UniRef100_B9RGQ2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Nudix hydrolase, putative n=1 Tax=Ricinus communis RepID=B9RGQ2_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LWC7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LWC7_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma13g04150 not represented in the dataset |
Glyma13g04150 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g072500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g04150.1 sequence type=CDS gene model=Glyma13g04150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAGCAAGCAGAAGAGCACCTCGACGTTCTCACCAAAACCGGCCTCAAAACCGGCGTGTCCAAGCCCAGGGGAGACGTGCATCGCGATGGCGACTACCACCGCGCCGTCCACGTTTGGATATTCGCGGAGAGCACGCGGGAACTTCTCCTCCAACGGCGCGCCTCGTGCAAGGACTCGTGGCCCGATCTCTGGGATATTTCTAGTGCCGGCCACATTTCCGCTGGTGATTCGTCCCTCACCTCTGCTAGGAGGGAGCTTGAAGAAGAGTTGGGTATAACCCTTCCTAAGGATGCATTTGAATTGATATTTGTTTTCCTCCAAGAGTGTGTCATAAATGATGGAAAATACATAAATAATGAATATAATGATGTGTATCTGGTAACAACACTTGATCCAATACCTCTGGAAGCCTTTGTACTTCAGGAAACTGAGGTTTCTGCTGTTAAATATATCTCTTATGAAGAGTATAAAAGGTTACTGGCCAAAGAAGATTCAGGCTATGTCCCTTATGATGTTAATGGACAATATGGTCAACTCTTTGATATAATTGAAAAGAGGTACAAGGAAAATACTGTAGCCCGCAGTTTGACTCTACAGAAGCAAATAAGTCGTTATGCTCCTATTTCCCTCAGTGCTGAGTTGACAGGGCTTACAGATTCAGACAAAGAGGCTCTAGTTTTTGTTGTCAAGGCTGCAAATGTTATGGATGAAATTTTTTATCTGCAGGCATGGTACAGTAATCCATCTCTTAGAGATTGGTTGAAGGAGCATGCTGATACATCAGAGTTTAATAAGTTGAAATGGTCATATTATCAGATTAACAAGAGCCCGTGGTCTAGCCTTGATGAAGACGAGGCATTTTTGTCGACTGCAGATTCAGCAATAAGGTTGCTTTCTAAAGCAACTAGGATAGTGAAAGATTGGAAGGGTTTGGAATACAGAGCAGCATTTCCCTTGCTTAAACCTGCTGGCGCTAATTTCTACCCTCCAGACATGGACAAAATGGAGTTTGAATTATGGAAGGACAGTCTAGAAAAGCATGAACAGAAGGAAGCAACAGGCTTTTTCAGTGTTATTAAAAGGCACAGTGAATTTATTTTAGATTCTCATCTGTCTGATAACAAAACAGGTTCTCATGATCTCTATATAGTTCCTTACTCCGAAGAGTACAAGTCTCTTCTTGCAAAAGCCTCTGATTTATTGCATAAAGCTGGAGACATTAGCGACTCACCGGGTTTGAAGAGGCTGCTACATAGCAAGGCTGATGCTTTCCTTTCAAATGATTATTATGACTCAGATATAGCCTGGATGGAATTGGACTCTAAGTTAGATGTCACTATTGGTCCGTATGAAACTTATGAGGATAAACTTTTTGGATATAAGGCTACCTTTGAAGCATATATTGGAATCAGAGATGACGAAGCAACAGCTCAATTGAAACTCTTTGGTGATAATCTGCTGCTTCTGGAGCAAAATCTCCCAATGGACAGTGCATACAAATCAGAAGATGTGAATGCAGCACCTATCCGTGTTATTCAGCTTCTATATAATGCAGGGGATGTCAAGGGACCACAAACTCTTGCTTTCAATCTTCCAAATGATGAGCGTATTGTAAAAGACCGGGGATCATCAATGGTCATGCTTAAGAATGTTTCAGAGGCTAAGTTCAAGCATATTCTTCTTCCTATAGCTGCTGCCTGTGTTGCAAATGACCAACAAGAACATGTAGATTTTGAATCATTCTTTACACATACAATTTGTCATGAATGCTGCCATGGAATTGGACCACATACCATAACACTTCCAAATGGCCAAAAGTCTACTGTCAGATTGGAATTGCAAGAATTTTACTCGGCTCTGGAAGAAGCAAAAGCTGATATAGTTGGCCTTTGGGCATTGAGGTTCTTAATCTCCCAG
>Glyma13g04150.1 sequence type=predicted peptide gene model=Glyma13g04150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQQAEEHLDVLTKTGLKTGVSKPRGDVHRDGDYHRAVHVWIFAESTRELLLQRRASCKDSWPDLWDISSAGHISAGDSSLTSARRELEEELGITLPKDAFELIFVFLQECVINDGKYINNEYNDVYLVTTLDPIPLEAFVLQETEVSAVKYISYEEYKRLLAKEDSGYVPYDVNGQYGQLFDIIEKRYKENTVARSLTLQKQISRYAPISLSAELTGLTDSDKEALVFVVKAANVMDEIFYLQAWYSNPSLRDWLKEHADTSEFNKLKWSYYQINKSPWSSLDEDEAFLSTADSAIRLLSKATRIVKDWKGLEYRAAFPLLKPAGANFYPPDMDKMEFELWKDSLEKHEQKEATGFFSVIKRHSEFILDSHLSDNKTGSHDLYIVPYSEEYKSLLAKASDLLHKAGDISDSPGLKRLLHSKADAFLSNDYYDSDIAWMELDSKLDVTIGPYETYEDKLFGYKATFEAYIGIRDDEATAQLKLFGDNLLLLEQNLPMDSAYKSEDVNAAPIRVIQLLYNAGDVKGPQTLAFNLPNDERIVKDRGSSMVMLKNVSEAKFKHILLPIAAACVANDQQEHVDFESFFTHTICHECCHGIGPHTITLPNGQKSTVRLELQEFYSALEEAKADIVGLWALRFLISQ
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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