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Report for Sequence Feature Glyma13g04120

Feature Type:gene_model
Chromosome:Gm13
Start:4457353
stop:4472622
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G26930AT Annotation by Michelle Graham. TAIR10: 4-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase | chr2:11491829-11494229 REVERSE LENGTH=383 SoyBaseE_val: 0ISS
GO:0006783GO-bp Annotation by Michelle Graham. GO Biological Process: heme biosynthetic process SoyBaseN/AISS
GO:0009637GO-bp Annotation by Michelle Graham. GO Biological Process: response to blue light SoyBaseN/AISS
GO:0009644GO-bp Annotation by Michelle Graham. GO Biological Process: response to high light intensity SoyBaseN/AISS
GO:0009744GO-bp Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus SoyBaseN/AISS
GO:0010114GO-bp Annotation by Michelle Graham. GO Biological Process: response to red light SoyBaseN/AISS
GO:0010155GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of proton transport SoyBaseN/AISS
GO:0010218GO-bp Annotation by Michelle Graham. GO Biological Process: response to far red light SoyBaseN/AISS
GO:0016114GO-bp Annotation by Michelle Graham. GO Biological Process: terpenoid biosynthetic process SoyBaseN/AISS
GO:0019288GO-bp Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0050515GO-mf Annotation by Michelle Graham. GO Molecular Function: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity SoyBaseN/AISS
PTHR20861Panther HOMOSERINE/4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL KINASE JGI ISS
PTHR20861:SF2Panther 4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL KINASE JGI ISS
PF00288PFAM GHMP kinases N terminal domain JGI ISS
PF08544PFAM GHMP kinases C terminal JGI ISS
UniRef100_A9ZN11UniRef Annotation by Michelle Graham. Most informative UniRef hit: 4-(Cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase n=1 Tax=Hevea brasiliensis RepID=A9ZN11_HEVBR SoyBaseE_val: 0ISS
UniRef100_UPI000233BC41UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233BC41 related cluster n=1 Tax=unknown RepID=UPI000233BC41 SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g04120 not represented in the dataset

Glyma13g04120 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma20g08930 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g072700 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma13g04120.2   sequence type=CDS   gene model=Glyma13g04120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCCTCTCTCTTTCTTTGCAGTAACTACGTCTTCCCCACTTCCCAAAACCCCTTCAGAAGCAACCATTTAGCTCAATTCAGACCAAATGGGCCCTCCAATTTTCACTCAAAGCTTCGGTTTCAGAGACCCCACTTGGTCAGAGCCATGGTTTCTGATTCCAACACTTCCAGGAGACAAATAGAGATTGTGTATGACCCCGAAGGAAGGATTAACAAGTTGGCTGATGAAGTGGACAGGGAAACTCCCCTTTCAAGGCTTACTTTGTTCTCTCCTTGCAAGATAAATGTTTTCTTGAGAATAACCAACAAGAGGGAAGATGGGTATCATGATTTGGCATCCCTTTTTCATGTGATAAGTCTAGGTGACATAATTAAGTTCTCTTTGTCACCTTCAAAAACCAAGGATAGCCTGTCAACCAACGTGTCTGGGGTGCCCCTTGATGATAGAAATTTGATTATTAAGGCGCTTAATCTTTACAGGAAGAAGACTGGCAGTGACAAGTACTTTTGGATTCATCTTGATAAACGGGTGCCTACTGGGGCAGGGCTTGGCGGTGGAAGTAGCAACGCTGCAACTACACTATGGGCAGCCAATCAATTTAGTGGCTGTCCTGCCTCTGAGAAAGAACTCCAAGAATGGTCAAGTGAGATTGGATCAGATATTCCCTTCTTTTTCTCTCAGGGAGCAGCCTATTGCACTGGTCGAGGAGAGGTTGTTCAGAATATTCCTCCACCAGTATCTCTAGATGTTCCAATGGTTCTCATAAAGCCCCCAGAAGCATGTTCAACTGCCGAAGTCTACAAGCGTCTATGTTTGGACCAGACTAGTAATGTTGAACCTTTAACATTGCTGGAGAAGATCTCAAAGATTGGCATCTCACAAGATGTTTGTATTAATGATTTAGAACCTCCAGCATTTGAAGTTCTCCCCTCTCTCAAAAGACTGAAGCAGCGAATTAGTGCAGCTGGTCGTGGAGAATATGATGCTGTTTTTATGTCAGGAAGCGGAAGCACCATTGTTGGAGTTGGTTCTCCTGATCCTCCACAATTTGTTTATGATGATGACGAATACAAAGATGTGTTCTTATCAGATGCCTATTTTCTCACTCGAGAGGAAAATCAGTGGTACCAAGAGCCTACTTCAAGTCCTTCTGCCTCACCTTCAGTTGTTTCTGAGTCTGTTTGA

>Glyma13g04120.2   sequence type=predicted peptide   gene model=Glyma13g04120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSLFLCSNYVFPTSQNPFRSNHLAQFRPNGPSNFHSKLRFQRPHLVRAMVSDSNTSRRQIEIVYDPEGRINKLADEVDRETPLSRLTLFSPCKINVFLRITNKREDGYHDLASLFHVISLGDIIKFSLSPSKTKDSLSTNVSGVPLDDRNLIIKALNLYRKKTGSDKYFWIHLDKRVPTGAGLGGGSSNAATTLWAANQFSGCPASEKELQEWSSEIGSDIPFFFSQGAAYCTGRGEVVQNIPPPVSLDVPMVLIKPPEACSTAEVYKRLCLDQTSNVEPLTLLEKISKIGISQDVCINDLEPPAFEVLPSLKRLKQRISAAGRGEYDAVFMSGSGSTIVGVGSPDPPQFVYDDDEYKDVFLSDAYFLTREENQWYQEPTSSPSASPSVVSESV*







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