Glyma13g04080 - SoyBase

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Report for Sequence Feature Glyma13g04080

Feature Type:	gene_model
Chromosome:	Gm13
Start:	4423553
stop:	4426789
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g04080

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G40830	AT	Annotation by Michelle Graham. TAIR10: RING-H2 finger C1A \| chr2:17043642-17044628 FORWARD LENGTH=328	SoyBase	E_val: 5.00E-32	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR22763	Panther	RING ZINC FINGER PROTEIN	JGI		ISS
PF00097	PFAM	Zinc finger, C3HC4 type (RING finger)	JGI		ISS
UniRef100_B6T839	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RHC1A n=1 Tax=Zea mays RepID=B6T839_MAIZE	SoyBase	E_val: 7.00E-37	ISS
UniRef100_I1LWC2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LWC2_SOYBN	SoyBase	E_val: 2.00E-175	ISS

Expression Patterns of Glyma13g04080

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g04080 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g072900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g04080

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g04080

Limit To All Plant Sequences

>Glyma13g04080.4   sequence type=transcript   gene model=Glyma13g04080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TATAAAATTTAATATTAAAATTTCACCTATTTAAAATATAAAATTAAAATTTTGCATACGAGAAAAATTGAATTGGTTTATCCAAATAAAGAATTTAAATTTTAAAAAAATTGAATTAATTTATCCAAATAAAACCGTTGAAAAAAAAATTAAAATCAAAACAATTCAAATTCTAAATATTTCAAATATTAGAGAATTGCATGGGAAAATCGTCGCAAAACACTCAAGCTTCTATAATCTACACTACACAGTACAGACCTTTTTGTGGCTCAACGGTTGAACGTGGGCTCAACGATTATCCAAACACAGCTTAACTCGTCTTCTTTCTTTCGCTAGCTCGCTCAAGTTCTCTCTCGCTGTTTCCAGTGAAAGAAAAGGATGTCAAGTGGAGCAACATACTGGTGTTACACATGCAGGCAGCCAATCTGCCTTGCAAGGAGGGATCACATTTGCCCCTACTGTGACGAAGGCTTCTTGCAAGAACTTGATGAATTGCAAGGAGGTATGGAACAAAGAGGTTCTGAACCAAGAATGGGTGGAAGATACATAAACTTTGGTGTTAGGAGGCCTGGTTCTACCCCTCTTCCTGAATCATGGACTCGAGGTGTGTTCATATTTCCCAATCAAGAGGTGGCCGCAGATCGGGAAGGATTCTTTGAACAACACATTACAAATGACCCGCTTGGTGCATCACAATCTTCAATTGATGCAATGCCAACTATTAAGATCACACATGAACACCTCTACTCAAATCCAAAGTGTTCAGTTTGTATAGAAAGATTTGAAGTGGGTTCTGAGGCCAGGAAGATGCCATGTGACCACATTTACCACTCAGACTGCATCGTTCCATGGTTAGTTCATCATAACTCATGTCCTGTTTGCCGTGGTAAGCTGCCACCCGAAGGACATGTTAGTTCTCGTGGTAGTCAAATTTGGAGAGGAAGGAATGTCAATGGTAATAGTGAAAATGATATCTATAGGGGTAGGGAGAATAGACAGTTCAACGATGGATGGAGAAATCTACTATCATTTTTGAATTTTTGCGGCCAATCCTTTCTTCTAATTCAAATACTTAATCGTTGGAGCTGAGACTGGGGATACTACTCTCCTACAACTCTTTGACCAGAACAATGGCAGAAGTTAACTGAGTTTCATTTCTTCTCCAGCTGTCAAATAATGCTTATTTAAATGACATGAATAAAGCTTCTGAATGCTTTGAACTTGATCTCATAAAGATACTATTAGATCATAGAAGTATGTGAAAATGTTTGTAAATACAATATTTTTGGAAGCAATTTTCGTTCTATATTTTTGGTTGCTTAGTAGCTTAACCTTGTAGGTAATTTGCATGGTCTATTCTGAATGTGTTTGGGAGATAAGAGGAAAACGAATCAAAGGGGAAGGAAAGGTGAGTGATAAAAGAGAAACTGTGGAGCTTAACCTATGTATGTATCATCCCATAATGTATAGACCTTAATTATGCCCTCCTTTGATATTCATGTATTTTAGTATTTGTCTCACCTCTTAAGGAGACAAACACAACACTTTGCAAAATTGGATATGCATGCAATAGACAAAAATGTAGGACCATAAGGATATACTATCCTTGAATTTATACGAAAAATTGAGATCTGAATGGAAATGGGTTTAATTTTCTTATATTTTAAGTTTCTGGAGGACTACCACATCATCTTTAGATTGGAACCTATTATTATGAATAAATACTCGAGTAGTGATATATGAACCATTCATAATTTTATGCATCTTTATTAATATCTCTCATTTCTCTCTATTTTTTTCTTCATATTATGTCATAAATTTTATCATATTTATATTTTTTTTCCATCATTTTAGGTGTTGAAAAACATATGGAGTATCTACCAAATATTTTTCTAAATAATCAAAGCTAGTAAAGTTATGAAGCTCTACTAAATGCACAAACACATGCAAAACT

>Glyma13g04080.5   sequence type=transcript   gene model=Glyma13g04080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TATAAAATTTAATATTAAAATTTCACCTATTTAAAATATAAAATTAAAATTTTGCATACGAGAAAAATTGAATTGGTTTATCCAAATAAAGAATTTAAATTTTAAAAAAATTGAATTAATTTATCCAAATAAAACCGTTGAAAAAAAAATTAAAATCAAAACAATTCAAATTCTAAATATTTCAAATATTAGAGAATTGCATGGGAAAATCGTCGCAAAACACTCAAGCTTCTATAATCTACACTACACAGTACAGACCTTTTTGTGGCTCAACGGTTGAACGTGGGCTCAACGATTATCCAAACACAGCTTAACTCGTCTTCTTTCTTTCGCTAGCTCGCTCAAGTTCTCTCTCGCTGAAAAATAACAAAGTTGCAAATTGCTCTCTCTCTGTGAAAGAAAAGGATGTCAAGTGGAGCAACATACTGGTGTTACACATGCAGGCAGCCAATCTGCCTTGCAAGGAGGGATCACATTTGCCCCTACTGTGACGAAGGCTTCTTGCAAGAACTTGATGAATTGCAAGGAGGTATGGAACAAAGAGGTTCTGAACCAAGAATGGGTGGAAGATACATAAACTTTGGTGTTAGGAGGCCTGGTTCTACCCCTCTTCCTGAATCATGGACTCGAGGTGTGTTCATATTTCCCAATCAAGAGGTGGCCGCAGATCGGGAAGGATTCTTTGAACAACACATTACAAATGACCCGCTTGGTGCATCACAATCTTCAATTGATGCAATGCCAACTATTAAGATCACACATGAACACCTCTACTCAAATCCAAAGTGTTCAGTTTGTATAGAAAGATTTGAAGTGGGTTCTGAGGCCAGGAAGATGCCATGTGACCACATTTACCACTCAGACTGCATCGTTCCATGGTTAGTTCATCATAACTCATGTCCTGTTTGCCGTGGTAAGCTGCCACCCGAAGGACATGTTAGTTCTCGTGGTAGTCAAATTTGGAGAGGAAGGAATGTCAATGGTAATAGTGAAAATGATATCTATAGGGGTAGGGAGAATAGACAGTTCAACGATGGATGGAGAAATCTACTATCATTTTTGAATTTTTGCGGCCAATCCTTTCTTCTAATTCAAATACTTAATCGTTGGAGCTGAGACTGGGGATACTACTCTCCTACAACTCTTTGACCAGAACAATGGCAGAAGTTAACTGAGTTTCATTTCTTCTCCAGCTGTCAAATAATGCTTATTTAAATGACATGAATAAAGCTTCTGAATGCTTTGAACTTGATCTCATAAAGATACTATTAGATCATAGAAGTATGTGAAAATGTTTGTAAATACAATATTTTTGGAAGCAATTTTCGTTCTATATTTTTGGTTGCTTAGTAGCTTAACCTTGTAGGTAATTTGCATGGTCTATTCTGAATGTGTTTGGGAGATAAGAGGAAAACGAATCAAAGGGGAAGGAAAGGTGAGTGATAAAAGAGAAACTGTGGAGCTTAACCTATGTATGTATCATCCCATAATGTATAGACCTTAATTATGCCCTCCTTTGATATTCATGTATTTTAGTATTTGTCTCACCTCTTAAGGAGACAAACACAACACTTTGCAAAATTGGATATGCATGCAATAGACAAAAATGTAGGACCATAAGGATATACTATCCTTGAATTTATACGAAAAATTGAGATCTGAATGGAAATGGGTTTAATTTTCTTATATTTTAAGTTTCTGGAGGACTACCACATCATCTTTAGATTGGAACCTATTATTATGAATAAATACTCGAGTAGTGATATATGAACCATTCATAATTTTATGCATCTTTATTAATATCTCTCATTTCTCTCTATTTTTTTCTTCATATTATGTCATAAATTTTATCATATTTATATTTTTTTTCCATCATTTTAGGTGTTGAAAAACATATGGAGTATCTACCAAATATTTTTCTAAATAATCAAAGCTAGTAAAGTTATGAAGCTCTACTAAATGCACAAACACATGCAAAACT

Coding sequences of Glyma13g04080

Limit To All Plant Sequences

>Glyma13g04080.3   sequence type=CDS   gene model=Glyma13g04080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAAGTGGAGCAACATACTGGTGTTACACATGCAGGCAGCCAATCTGCCTTGCAAGGAGGGATCACATTTGCCCCTACTGTGACGAAGGCTTCTTGCAAGAACTTGATGAATTGCAAGGAGGTATGGAACAAAGAGGTTCTGAACCAAGAATGGGTGGAAGATACATAAACTTTGGTGTTAGGAGGCCTGGTTCTACCCCTCTTCCTGAATCATGGACTCGAGGTGTGTTCATATTTCCCAATCAAGAGGTGGCCGCAGATCGGGAAGGATTCTTTGAACAACACATTACAAATGACCCGCTTGGTGCATCACAATCTTCAATTGATGCAATGCCAACTATTAAGATCACACATGAACACCTCTACTCAAATCCAAAGTGTTCAGTTTGTATAGAAAGATTTGAAGTGGGTTCTGAGGCCAGGAAGATGCCATGTGACCACATTTACCACTCAGACTGCATCGTTCCATGGTTAGTTCATCATAACTCATGTCCTGTTTGCCGTGGTAAGCTGCCACCCGAAGGACATGTTAGTTCTCGTGGTAGTCAAATTTGGAGAGGAAGGAATGTCAATGGTAATAGTGAAAATGATATCTATAGGGGTAGGGAGAATAGACAGTTCAACGATGGATGGAGAAATCTACTATCATTTTTGAATTTTTGCGGCCAATCCTTTCTTCTAATTCAAATACTTAATCGTTGGAGCTGA

>Glyma13g04080.4   sequence type=CDS   gene model=Glyma13g04080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAAGTGGAGCAACATACTGGTGTTACACATGCAGGCAGCCAATCTGCCTTGCAAGGAGGGATCACATTTGCCCCTACTGTGACGAAGGCTTCTTGCAAGAACTTGATGAATTGCAAGGAGGTATGGAACAAAGAGGTTCTGAACCAAGAATGGGTGGAAGATACATAAACTTTGGTGTTAGGAGGCCTGGTTCTACCCCTCTTCCTGAATCATGGACTCGAGGTGTGTTCATATTTCCCAATCAAGAGGTGGCCGCAGATCGGGAAGGATTCTTTGAACAACACATTACAAATGACCCGCTTGGTGCATCACAATCTTCAATTGATGCAATGCCAACTATTAAGATCACACATGAACACCTCTACTCAAATCCAAAGTGTTCAGTTTGTATAGAAAGATTTGAAGTGGGTTCTGAGGCCAGGAAGATGCCATGTGACCACATTTACCACTCAGACTGCATCGTTCCATGGTTAGTTCATCATAACTCATGTCCTGTTTGCCGTGGTAAGCTGCCACCCGAAGGACATGTTAGTTCTCGTGGTAGTCAAATTTGGAGAGGAAGGAATGTCAATGGTAATAGTGAAAATGATATCTATAGGGGTAGGGAGAATAGACAGTTCAACGATGGATGGAGAAATCTACTATCATTTTTGAATTTTTGCGGCCAATCCTTTCTTCTAATTCAAATACTTAATCGTTGGAGCTGA

>Glyma13g04080.5   sequence type=CDS   gene model=Glyma13g04080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAAGTGGAGCAACATACTGGTGTTACACATGCAGGCAGCCAATCTGCCTTGCAAGGAGGGATCACATTTGCCCCTACTGTGACGAAGGCTTCTTGCAAGAACTTGATGAATTGCAAGGAGGTATGGAACAAAGAGGTTCTGAACCAAGAATGGGTGGAAGATACATAAACTTTGGTGTTAGGAGGCCTGGTTCTACCCCTCTTCCTGAATCATGGACTCGAGGTGTGTTCATATTTCCCAATCAAGAGGTGGCCGCAGATCGGGAAGGATTCTTTGAACAACACATTACAAATGACCCGCTTGGTGCATCACAATCTTCAATTGATGCAATGCCAACTATTAAGATCACACATGAACACCTCTACTCAAATCCAAAGTGTTCAGTTTGTATAGAAAGATTTGAAGTGGGTTCTGAGGCCAGGAAGATGCCATGTGACCACATTTACCACTCAGACTGCATCGTTCCATGGTTAGTTCATCATAACTCATGTCCTGTTTGCCGTGGTAAGCTGCCACCCGAAGGACATGTTAGTTCTCGTGGTAGTCAAATTTGGAGAGGAAGGAATGTCAATGGTAATAGTGAAAATGATATCTATAGGGGTAGGGAGAATAGACAGTTCAACGATGGATGGAGAAATCTACTATCATTTTTGAATTTTTGCGGCCAATCCTTTCTTCTAATTCAAATACTTAATCGTTGGAGCTGA

Predicted protein sequences of Glyma13g04080

Limit To All Plant Sequences

>Glyma13g04080.3   sequence type=predicted peptide   gene model=Glyma13g04080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSGATYWCYTCRQPICLARRDHICPYCDEGFLQELDELQGGMEQRGSEPRMGGRYINFGVRRPGSTPLPESWTRGVFIFPNQEVAADREGFFEQHITNDPLGASQSSIDAMPTIKITHEHLYSNPKCSVCIERFEVGSEARKMPCDHIYHSDCIVPWLVHHNSCPVCRGKLPPEGHVSSRGSQIWRGRNVNGNSENDIYRGRENRQFNDGWRNLLSFLNFCGQSFLLIQILNRWS*

>Glyma13g04080.4   sequence type=predicted peptide   gene model=Glyma13g04080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSGATYWCYTCRQPICLARRDHICPYCDEGFLQELDELQGGMEQRGSEPRMGGRYINFGVRRPGSTPLPESWTRGVFIFPNQEVAADREGFFEQHITNDPLGASQSSIDAMPTIKITHEHLYSNPKCSVCIERFEVGSEARKMPCDHIYHSDCIVPWLVHHNSCPVCRGKLPPEGHVSSRGSQIWRGRNVNGNSENDIYRGRENRQFNDGWRNLLSFLNFCGQSFLLIQILNRWS*

>Glyma13g04080.5   sequence type=predicted peptide   gene model=Glyma13g04080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSGATYWCYTCRQPICLARRDHICPYCDEGFLQELDELQGGMEQRGSEPRMGGRYINFGVRRPGSTPLPESWTRGVFIFPNQEVAADREGFFEQHITNDPLGASQSSIDAMPTIKITHEHLYSNPKCSVCIERFEVGSEARKMPCDHIYHSDCIVPWLVHHNSCPVCRGKLPPEGHVSSRGSQIWRGRNVNGNSENDIYRGRENRQFNDGWRNLLSFLNFCGQSFLLIQILNRWS*

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