SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G12110 | AT | Annotation by Michelle Graham. TAIR10: Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6 | chr5:3914483-3915732 FORWARD LENGTH=228 | SoyBase | E_val: 6.00E-104 | ISS |
| GO:0006414 | GO-bp | Annotation by Michelle Graham. GO Biological Process: translational elongation | SoyBase | N/A | ISS |
| GO:0009407 | GO-bp | Annotation by Michelle Graham. GO Biological Process: toxin catabolic process | SoyBase | N/A | ISS |
| GO:0010583 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone | SoyBase | N/A | ISS |
| GO:0005853 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: eukaryotic translation elongation factor 1 complex | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0003746 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: translation elongation factor activity | SoyBase | N/A | ISS |
| KOG1668 | KOG | Elongation factor 1 beta/delta chain | JGI | ISS | |
| PTHR11595 | Panther | ELONGATION FACTOR 1-BETA | JGI | ISS | |
| PTHR11595:SF5 | Panther | ELONGATION FACTOR 1-BETA | JGI | ISS | |
| PF00736 | PFAM | EF-1 guanine nucleotide exchange domain | JGI | ISS | |
| UniRef100_B7FMR1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Elongation factor 1-beta n=1 Tax=Medicago truncatula RepID=B7FMR1_MEDTR | SoyBase | E_val: 4.00E-113 | ISS |
| UniRef100_I1LWB8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LWB8_SOYBN | SoyBase | E_val: 3.00E-158 | ISS |
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Glyma13g04050 not represented in the dataset |
Glyma13g04050 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g073200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g04050.2 sequence type=transcript gene model=Glyma13g04050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATTGGATCCAAGTGTGACACATATTTGGGAGAGAATATACCTTTATTCACTTGCATCTCAACTAGGGTTTGTTCCTACTATAAATATCAATCATCGAACCATCCCTATTGCCCTTCTAGCTTTTTCCCAGTCCAAGCAGCCTCCAATTCGTGCCACTCTCTTCAAAATGGCCGTTACCTTCTCAAATCTCCACACAGAATCAGGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAAGCCAGGTGACTCTTTTCCCAATGCTGCCAAGTGGTACGAGGTTGTCTCATCTCAGCTTGCTGCAAGCTTCCCCGGCAATGCTCAAGGGGTGAGATTCAGTGGCAAAGCTTCTGCTCCAGCGGAGGCTGCTCCTGCGAAACCGGATGCTTCTGCTGCTGAAGATGATGATGACCTTGATCTCTTTGGCGATGAGACTGAGGAAGACAAAAAGGCAGCAGAGGAAAGGGAGGCTGCTAAGAAGTCTACCAAGAAGAAAGAGAGTGGCAAATCTTCTGTTCTGCTTGACGTTAAGCCTTGGGATGATGAAACAGACATGAAGAAGCTGGAAGAGGCTGTTCGCAGTGTTGAGATGCCTGGTCTATTGTGGGGAGCATGTATGTTGAACTTTGTTAGTTTTTCCTGTAAATATCTGTTGTGTTTAACTTCAATATATTATGATGTGAACAACATGTTTTGTTGGTGTTGACACAGCCAAACTGGTTCCTGTTGGTTATGGGATCAAGAAGTTGCAGATCATGTTAACTATTGTCGATGACCTTGTATCTGTGGACACCCTTGTTGAGGAGACTCTCACAGTTGAGCCCATCAATGAGTATGTCCAAAGCTGTGACATTGTTGCATTCAACAAAATCTAAGTTTTCATGTTGAATTTCAGTCATTTTGAAGCAGCCAATTAGTTTGTTTTTCTTTCTCATCCACTTCCTTCTAACTTATTCATGTCTAGTTTATGTTTCAGTGATGGTTTTGTTACTAGAATTCTGAGAAGTAAAAAATATATATTTTGAATATTTATGTTCTTGTGTTCCATCAATGTGTTGTTAGATTCTAATATAAAATAGGTGTCCTACTCCTTTCCACTATTACAATAAAAATTAATTATTCGAATTGAGATCGGATCGGGTTCAATTTAAAAGCTGGTTCAAGAAGGAAGATTGTGAGTACAAGTATTGTTTAAGTCATCATGAGATAAAACTGTACAAT
>Glyma13g04050.1 sequence type=CDS gene model=Glyma13g04050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCGTTACCTTCTCAAATCTCCACACAGAATCAGGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAAGCCAGGTGACTCTTTTCCCAATGCTGCCAAGTGGTACGAGGTTGTCTCATCTCAGCTTGCTGCAAGCTTCCCCGGCAATGCTCAAGGGGTGAGATTCAGTGGCAAAGCTTCTGCTCCAGCGGAGGCTGCTCCTGCGAAACCGGATGCTTCTGCTGCTGAAGATGATGATGACCTTGATCTCTTTGGCGATGAGACTGAGGAAGACAAAAAGGCAGCAGAGGAAAGGGAGGCTGCTAAGAAGTCTACCAAGAAGAAAGAGAGTGGCAAATCTTCTGTTCTGCTTGACGTTAAGCCTTGGGATGATGAAACAGACATGAAGAAGCTGGAAGAGGCTGTTCGCAGTGTTGAGATGCCTGGTCTATTGTGGGGAGCATCCAAACTGGTTCCTGTTGGTTATGGGATCAAGAAGTTGCAGATCATGTTAACTATTGTCGATGACCTTGTATCTGTGGACACCCTTGTTGAGGAGACTCTCACAGTTGAGCCCATCAATGAGTATGTCCAAAGCTGTGACATTGTTGCATTCAACAAAATCTAA >Glyma13g04050.2 sequence type=CDS gene model=Glyma13g04050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCGTTACCTTCTCAAATCTCCACACAGAATCAGGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAAGCCAGGTGACTCTTTTCCCAATGCTGCCAAGTGGTACGAGGTTGTCTCATCTCAGCTTGCTGCAAGCTTCCCCGGCAATGCTCAAGGGGTGAGATTCAGTGGCAAAGCTTCTGCTCCAGCGGAGGCTGCTCCTGCGAAACCGGATGCTTCTGCTGCTGAAGATGATGATGACCTTGATCTCTTTGGCGATGAGACTGAGGAAGACAAAAAGGCAGCAGAGGAAAGGGAGGCTGCTAAGAAGTCTACCAAGAAGAAAGAGAGTGGCAAATCTTCTGTTCTGCTTGACGTTAAGCCTTGGGATGATGAAACAGACATGAAGAAGCTGGAAGAGGCTGTTCGCAGTGTTGAGATGCCTGGTCTATTGTGGGGAGCATGTATGTTGAACTTTGTTAGTTTTTCCTGTAAATATCTGTTGTGTTTAACTTCAATATATTATGATGTGAACAACATGTTTTGTTGGTGTTGA
>Glyma13g04050.1 sequence type=predicted peptide gene model=Glyma13g04050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAVTFSNLHTESGLKSLDDFLSGKVYVSGDQFTKDDIKVYGAVLEKPGDSFPNAAKWYEVVSSQLAASFPGNAQGVRFSGKASAPAEAAPAKPDASAAEDDDDLDLFGDETEEDKKAAEEREAAKKSTKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVEMPGLLWGASKLVPVGYGIKKLQIMLTIVDDLVSVDTLVEETLTVEPINEYVQSCDIVAFNKI* >Glyma13g04050.2 sequence type=predicted peptide gene model=Glyma13g04050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAVTFSNLHTESGLKSLDDFLSGKVYVSGDQFTKDDIKVYGAVLEKPGDSFPNAAKWYEVVSSQLAASFPGNAQGVRFSGKASAPAEAAPAKPDASAAEDDDDLDLFGDETEEDKKAAEEREAAKKSTKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVEMPGLLWGACMLNFVSFSCKYLLCLTSIYYDVNNMFCWC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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