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Report for Sequence Feature Glyma13g04041

Feature Type:gene_model
Chromosome:Gm13
Start:4344811
stop:4346283
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g04041
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G26940AT Annotation by Michelle Graham. TAIR10: C2H2-type zinc finger family protein | chr2:11496518-11497378 REVERSE LENGTH=286 SoyBaseE_val: 7.00E-16ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
PTHR26374Panther FAMILY NOT NAMED JGI ISS
PTHR26374:SF459Panther JGI ISS
UniRef100_G7IUR9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Tapetum-specific zinc finger protein n=1 Tax=Medicago truncatula RepID=G7IUR9_MEDTR SoyBaseE_val: 3.00E-32ISS
UniRef100_I1LWB7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LWB7_SOYBN SoyBaseE_val: 1.00E-127ISS

Expression Patterns of Glyma13g04041
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g04041 not represented in the dataset
Glyma13g04041 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g04041
ParalogEvidenceComments
Glyma20g11067 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g04041 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g073300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g04041
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g04041
>Glyma13g04041.1   sequence type=CDS   gene model=Glyma13g04041   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAAGATCGCTCTTGGGTCCTTGCAAAGCTGAGGTTGAATCAACAACGGCTGATGAGGCAACTGCAGCGAAAAGCCCTTCACCAATGCTACGTGAGTGCAATATTTGCGGCAAGGTCTTCAGCAGCGGCAAGGCTTTGGGGGGTCACCGAAGATCGCACTTTCAAAAGCACCAGAAGAAGGTAAAAGTCCGTTTCACCAATCACTCGTCAAAAGCTGGTGATAGCAGCAACATTAATAGGGCTAATAATTGTGATTACGATGCTGATGATGATGGGAAACGCATTTGTTGCATTTGCAAGAAGGAATTTCCCACCAAAAACGCATTGTTTGGCCACATGCGATCTCACCCTGAGAGGTCATGGAAGGGTGTGTCTCCTCCCACTCGTTCTCCCAATAAGAACTCCTCATCTTCTTCTCTCTCTTCTTACACTTTTTCTTCCCAAAATTCTGATTCTATGGAGAAAAACATGGAAGAGTATCGTGATGATGATTATGTTGATTGTGTTGGTGGGGGTGGGGGTAATATTGTTATTATTGATCTTTCAACTTTTACTTCACCCAGTTGGCTTAAGACTGATGTGAGAGGCAGAAAGTGTATTGGGGCTTATGAGGCTGCTGAAACCCTCACTTACCTAAGTGCTTATTCTAAGTACTTTTGCAGTGAGTCTAATAGGGTTTCTCCCAAGAAGGATGAAGTGCTGTCGAAAAGTGCTCCACCTCTAATCAAGAATGGCAAAAGGAAGGTTGGTGAATCGTCATCGAGCAAGAAACATAAGGTGAAAAAGATTAAGTTTTATCTGAATGGTGAATTGAAGATCGGAAAGAAAAATGATGGGGACGGTGAATTTGATGATGATGAGGGTGAGAAGCTGAATAGGTGCAAGGGTTTATCTAAATCTGGGGTTGGAAGAATTTTGTATATGGATGATGAGGTGGAAGAGGAGGAGGGTGTGGACGAGGCTTTCGACGATGTGATCACTGAGGTGGTTGCTCCTGCTAAGGTGCAAGATCACGTTGATGAAAGGAAGGTGAAGAGGGTGGTGGACCATAAAGGGAAGAACAGTAAGAAACTGGTGATGAAATTTAAGGCAAAAGACACAGAATATGAGAATGGAGGTCAAGAGAAAGAGAAAGTGGGTGGGTATAAATGTGGAGCTTGTGGGAAAAAATTTTCAACTTTCCAAGGCTTGGGAGGGCACAGATCAGTGCACAAGGAGAAGAACACTGAGATCATGGACGAGTCGAACCGCTCCAAAGCTGTTGTTGCTGATCAAGAAGACAATTCTTCCAGCTCTAGTAACATGCACAAGGTGGATGAGGCCACAATGAATGAAGCACCATTACCAACAGACGAGACAACAGCGAATGAAAAGGCACCATTGCTGGCAGATGAGGCATGTCAATCTTCTCCATGTACCAAGAAATTGGATTTTGATCTGAATGAGCTGCCTTGTGGTATGAAGGATTAA
Predicted protein sequences of Glyma13g04041
>Glyma13g04041.1   sequence type=predicted peptide   gene model=Glyma13g04041   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKRSLLGPCKAEVESTTADEATAAKSPSPMLRECNICGKVFSSGKALGGHRRSHFQKHQKKVKVRFTNHSSKAGDSSNINRANNCDYDADDDGKRICCICKKEFPTKNALFGHMRSHPERSWKGVSPPTRSPNKNSSSSSLSSYTFSSQNSDSMEKNMEEYRDDDYVDCVGGGGGNIVIIDLSTFTSPSWLKTDVRGRKCIGAYEAAETLTYLSAYSKYFCSESNRVSPKKDEVLSKSAPPLIKNGKRKVGESSSSKKHKVKKIKFYLNGELKIGKKNDGDGEFDDDEGEKLNRCKGLSKSGVGRILYMDDEVEEEEGVDEAFDDVITEVVAPAKVQDHVDERKVKRVVDHKGKNSKKLVMKFKAKDTEYENGGQEKEKVGGYKCGACGKKFSTFQGLGGHRSVHKEKNTEIMDESNRSKAVVADQEDNSSSSSNMHKVDEATMNEAPLPTDETTANEKAPLLADEACQSSPCTKKLDFDLNELPCGMKD*






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