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Report for Sequence Feature Glyma13g04020
Feature Type: gene_model
Chromosome: Gm13
Start: 4245201
stop: 4250227
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma13g04020
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G08400 AT
Annotation by Michelle Graham. TAIR10: RINT-1 / TIP-1 family | chr1:2643348-2646005 REVERSE LENGTH=804
SoyBase E_val: 0 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
KOG2218
KOG
ER to golgi transport protein/RAD50-interacting protein 1
JGI ISS
PTHR13520 Panther
RAD50-INTERACTING PROTEIN 1 (PROTEIN RINT-1)
JGI ISS
PF04437 PFAM
RINT-1 / TIP-1 family
JGI ISS
UniRef100_I1LWB5 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LWB5_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q9SJF2 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: T27G7.8 n=1 Tax=Arabidopsis thaliana RepID=Q9SJF2_ARATH
SoyBase E_val: 0 ISS
Expression Patterns of Glyma13g04020
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma13g04020
Paralog Evidence Comments
Glyma20g10986 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma13g04020 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.13g073500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma13g04020
Transcripts of Glyma13g04020
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g04020.2 sequence type=transcript gene model=Glyma13g04020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
TCAAGTTTTTTTGACAAAAAGAGCCCCACTAGTCCTTACCGAAGTTGAAAAAACCACTGTCCCTCACACCAAAAAACTGCTACTACCATACATCACCGCACACTCACTCACCGCACCGCACCGCACTGCACGTTACTAACAATGGAGCCACCTCCTTCTCATCCTCTTCCCCGTTTGCCAAGCACCGCTGACCTCACGCCCCAACATGCGGCGTTTCTGGATCAGCACTTCCGAACCAAACGCGACCTATCTCGCGAATCTTCTAATCTCCCTCTCTCCTCCTCGCTCTGGCAACAGTGCTCCGAACTTGAGTCCCGCCTCCTCCAATATCTCACGAAACGCACCATTTCGTGGATCTCTCGCTCCTTCAGCGTCAGATCCTCGCTTCAGCAACTCTCCCTCGCACTCCAAAGTCTCTCCCTCTGCACTTCTCCACAGGGGATTGGTTCGAAGAGGTTTCGGTGGGTGTTGAGTGAGGAGATTCCTCGATTGGCCAACGAAATGAACCGAATTGAGTCTCTTCGGTGTTATCTTGTTGGAAGCTCTGGTTGGGGATCTTGAAGATGCTGCTCTCTTTGTTATTGCTTGCCACACAGGGAATATGTTTTCGTCGAAGCTCTTGATTTCACCCATCTCTGAAGATGCTGCAACAAAACATGACAAGTTGCTTCAGGCCATAAAAGCCATGAGTGATATTGAAGAAGTATTGGTCGGTGTTGTGAAATTCCATCCTCAGTGGCATTGTCTTCTGAAGTCTGTTGACACTAGAGTAGATAAAATCTTATCTGCTCTCCGGCCACAAGCTCTTGCAGATCATCGGGCTCTTCTGATCTCTCTTGGGTGGCCACCAAAACTGATTTCATTGAAAAATGGAAGTGATCATATCACAAGCCTACCTAATCCATTAATTCTTATGCAAGAAGATAAGAGAAGAAATTACTCTCAAAGTTTTATAGCTCTTTGTGCTTTGCAGCATCTGCAAAATAGAAGGGAAGAAAGACAGCTTAATAGTAATCTTATAAAAAGAGACACGCAGAATATACAGCTTTGGGCCATTGATGAATTAGTGTCTCCTATTGCGTCAAGGATGGAATGCCATTTCACCAAATGGTCCGAGCAGCCAGAATATATGTTTGCTTTGGCGTATAAAGTTACCAGAGATTTTATTTCAGGAATAGATGATGTCTTGCAGCCTCTTATTGACAAGGCCAGGCTTATCAGTTGTAGTGCAAAGGATGCTTGGGTCTCTGCAATGGTCCAAATGCTTTCTGGCTTTCTAGAAAAGAAAGTTTTTCGGTTTCTCACTGAAAGATACAAAGTAAAGCATTTGAAGCCTGATGTATCGTCTTCATGGCTTCACCTTGTGGATCTTATCATTGCATTTGACAAAAAGATGCAATCCCTTCTCAATCTGGATACTTGTTTTTTGGCAGTTCCTGGGAGTTTTGAAGGGCTCTCAAGAGGCGTCTCAGTTCTATCAATATTTTGTAATAGGCCTGATTGGCTGAAGGTCTGGGCAAAAATAGAGTTCAAAAATGCATGGAAGAAACTTAAACCTGAACTGATAGAGGAGAAAGCGTGGATTACTTCTAAGAAATGTATATCTGGGATTGACACTGAGCAGGAGTTTCTGCTATTGACTGTTGAGGATCTCAAAGCTCCACCTATTGCAGAGTTTTTTCTTAAAATTATTTGGGAAATGATTGAACGCTGCCAAACTATGCCATCCAGTTTATCACATGCACAATTTATTAGATTTACTGCAGGAAGATTCCTCTGGTATTTCTTTAAGCAATTACTTTTTCGGTTCAAGGCAACTGAATTGTGCATTGATAGTTCTGATGATGTTGCCATAGTTAGAGTGTGTGGATTAATAAATGCTGCCAGATATATTTGGATTAAATTGCAAGAATGGAGTGATGTTGCGGACTTTTTGGAGATGAAAATTGTTGAAAATGATTCTAGCAAGCCCACACAAGATGATACAATGGATAATGACTGTTTTTTTGACGAAGAAATAAGAAGCTTGTCTGAAATGGAAACCAACTGGCTTATGGAAATTATAGCAGTTGTTCTTCGACAGTTTGAAATGCTATCTTGGAAGTATGTTCAAAACAATGATAGTTTTGAGGATGACCAAGATTATACAAATCCAGTAGAGGATGTTGATTTAGTAGTCTCCAATGATTTTGTTGAAGCTTTAGATGCTTTAGATAGTTGGCTTCATACTGTGAAGATAAGTCTCAATAAAAAGGATTTCTTGGATTTGTGGAGAAGCATTGCTGAGGGGCTAGATCATTACATTTCATGCAGCATCGTCAGAAGTGAGAATTGGTTCTCTAAGATGGGCGTCTATCAATTTGAAGCTGATATGCAAGCACTAATTTTTATATTTCAGCCTTATTGTGCTCGCCCACAAGCATTTTTTCCTTGTATTAATGAGATTCTTAAGCTTTTGAAACTGAAAAAAGAAGAGGTAAAGCTAATGCAAACATTTTTGTCCAACAATCAAAATGGATCAGAGTGTTTGCATCTTTATGGAATTTATCATCTATCAGTTAATCAAATTCTTCAAGTTCTTAGATACAAAATTTGGGTTGGTTGATTTATACAAAAACGTGGTATGCCCTTGGACAAGGAAAAGAACTTTGTTTATAGTATACATAAATTATTGAAAAATTATACTGCAAATATTCCATGCGTAATTGGATAAGCACATGGAACATTGAAACCTAGACTCGAAGGCTGGTGATTAGTTGGGATATGAGAAGTTGAGAATTGTGATGCAGAGGGACAATTCACAATTGTTATTCTACAGTAAGCTCCCCCCTCTTCCACCGTTTCTTGCTTTGTCCGGGAGCAGTGAGATCTCATCACAACATACAAAGTTATCGACCACATTTCAGAAACCACCATTACTTAATAAAAAAAATCTTGTCTCTGATCCCCATCACGCAAAGAGTGCTCTGAAATCACTGAATGTGCTGACTATGGACTTCTTGTTTCTTAGCTAAATAAGGCCCTTGAAAAAGCAGTATTTGTTTTAACTTTGCAGCACTCCCTTAATGTAATTAGCCCAAAGGAAAACAATTGTTGTAAGAGAATTGTATTTAACGTCAAAATCAATTTACGTGCTGCAAAAAATGTGAACCAAACAAACTGAAAATCAATTACCAGCTGCAAAATCTCAGCTCTTAGTTTCTGAATGTTAGCGAATTATTTGC
Coding sequences of Glyma13g04020
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g04020.1 sequence type=CDS gene model=Glyma13g04020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAGCCACCTCCTTCTCATCCTCTTCCCCGTTTGCCAAGCACCGCTGACCTCACGCCCCAACATGCGGCGTTTCTGGATCAGCACTTCCGAACCAAACGCGACCTATCTCGCGAATCTTCTAATCTCCCTCTCTCCTCCTCGCTCTGGCAACAGTGCTCCGAACTTGAGTCCCGCCTCCTCCAATATCTCACGAAACGCACCATTTCGTGGATCTCTCGCTCCTTCAGCGTCAGATCCTCGCTTCAGCAACTCTCCCTCGCACTCCAAAGTCTCTCCCTCTGCACTTCTCCACAGGGGATTGGTTCGAAGAGGTTTCGGTGGGTGTTGAGTGAGGAGATTCCTCGATTGGCCAACGAAATGAACCGAATTGAGTCTCTTCGGTGTTATCTTGAGACTGCTGTACAGTTGGAAGCTCTGGTTGGGGATCTTGAAGATGCTGCTCTCTTTGTTATTGCTTGCCACACAGGGAATATGTTTTCGTCGAAGCTCTTGATTTCACCCATCTCTGAAGATGCTGCAACAAAACATGACAAGTTGCTTCAGGCCATAAAAGCCATGAGTGATATTGAAGAAGTATTGGTCGGTGTTGTGAAATTCCATCCTCAGTGGCATTGTCTTCTGAAGTCTGTTGACACTAGAGTAGATAAAATCTTATCTGCTCTCCGGCCACAAGCTCTTGCAGATCATCGGGCTCTTCTGATCTCTCTTGGGTGGCCACCAAAACTGATTTCATTGAAAAATGGAAGTGATCATATCACAAGCCTACCTAATCCATTAATTCTTATGCAAGAAGATAAGAGAAGAAATTACTCTCAAAGTTTTATAGCTCTTTGTGCTTTGCAGCATCTGCAAAATAGAAGGGAAGAAAGACAGCTTAATAGTAATCTTATAAAAAGAGACACGCAGAATATACAGCTTTGGGCCATTGATGAATTAGTGTCTCCTATTGCGTCAAGGATGGAATGCCATTTCACCAAATGGTCCGAGCAGCCAGAATATATGTTTGCTTTGGCGTATAAAGTTACCAGAGATTTTATTTCAGGAATAGATGATGTCTTGCAGCCTCTTATTGACAAGGCCAGGCTTATCAGTTGTAGTGCAAAGGATGCTTGGGTCTCTGCAATGGTCCAAATGCTTTCTGGCTTTCTAGAAAAGAAAGTTTTTCGGTTTCTCACTGAAAGATACAAAGTAAAGCATTTGAAGCCTGATGTATCGTCTTCATGGCTTCACCTTGTGGATCTTATCATTGCATTTGACAAAAAGATGCAATCCCTTCTCAATCTGGATACTTGTTTTTTGGCAGTTCCTGGGAGTTTTGAAGGGCTCTCAAGAGGCGTCTCAGTTCTATCAATATTTTGTAATAGGCCTGATTGGCTGAAGGTCTGGGCAAAAATAGAGTTCAAAAATGCATGGAAGAAACTTAAACCTGAACTGATAGAGGAGAAAGCGTGGATTACTTCTAAGAAATGTATATCTGGGATTGACACTGAGCAGGAGTTTCTGCTATTGACTGTTGAGGATCTCAAAGCTCCACCTATTGCAGAGTTTTTTCTTAAAATTATTTGGGAAATGATTGAACGCTGCCAAACTATGCCATCCAGTTTATCACATGCACAATTTATTAGATTTACTGCAGGAAGATTCCTCTGGTATTTCTTTAAGCAATTACTTTTTCGGTTCAAGGCAACTGAATTGTGCATTGATAGTTCTGATGATGTTGCCATAGTTAGAGTGTGTGGATTAATAAATGCTGCCAGATATATTTGGATTAAATTGCAAGAATGGAGTGATGTTGCGGACTTTTTGGAGATGAAAATTGTTGAAAATGATTCTAGCAAGCCCACACAAGATGATACAATGGATAATGACTGTTTTTTTGACGAAGAAATAAGAAGCTTGTCTGAAATGGAAACCAACTGGCTTATGGAAATTATAGCAGTTGTTCTTCGACAGTTTGAAATGCTATCTTGGAAGTATGTTCAAAACAATGATAGTTTTGAGGATGACCAAGATTATACAAATCCAGTAGAGGATGTTGATTTAGTAGTCTCCAATGATTTTGTTGAAGCTTTAGATGCTTTAGATAGTTGGCTTCATACTGTGAAGATAAGTCTCAATAAAAAGGATTTCTTGGATTTGTGGAGAAGCATTGCTGAGGGGCTAGATCATTACATTTCATGCAGCATCGTCAGAAGTGAGAATTGGTTCTCTAAGATGGGCGTCTATCAATTTGAAGCTGATATGCAAGCACTAATTTTTATATTTCAGCCTTATTGTGCTCGCCCACAAGCATTTTTTCCTTGTATTAATGAGATTCTTAAGCTTTTGAAACTGAAAAAAGAAGAGGTAAAGCTAATGCAAACATTTTTGTCCAACAATCAAAATGGATCAGAGTGTTTGCATCTTTATGGAATTTATCATCTATCAGTTAATCAAATTCTTCAAGTTCTTAGATACAAAATTTGGGTTGGTTGA
>Glyma13g04020.2 sequence type=CDS gene model=Glyma13g04020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTTTTCGTCGAAGCTCTTGATTTCACCCATCTCTGAAGATGCTGCAACAAAACATGACAAGTTGCTTCAGGCCATAAAAGCCATGAGTGATATTGAAGAAGTATTGGTCGGTGTTGTGAAATTCCATCCTCAGTGGCATTGTCTTCTGAAGTCTGTTGACACTAGAGTAGATAAAATCTTATCTGCTCTCCGGCCACAAGCTCTTGCAGATCATCGGGCTCTTCTGATCTCTCTTGGGTGGCCACCAAAACTGATTTCATTGAAAAATGGAAGTGATCATATCACAAGCCTACCTAATCCATTAATTCTTATGCAAGAAGATAAGAGAAGAAATTACTCTCAAAGTTTTATAGCTCTTTGTGCTTTGCAGCATCTGCAAAATAGAAGGGAAGAAAGACAGCTTAATAGTAATCTTATAAAAAGAGACACGCAGAATATACAGCTTTGGGCCATTGATGAATTAGTGTCTCCTATTGCGTCAAGGATGGAATGCCATTTCACCAAATGGTCCGAGCAGCCAGAATATATGTTTGCTTTGGCGTATAAAGTTACCAGAGATTTTATTTCAGGAATAGATGATGTCTTGCAGCCTCTTATTGACAAGGCCAGGCTTATCAGTTGTAGTGCAAAGGATGCTTGGGTCTCTGCAATGGTCCAAATGCTTTCTGGCTTTCTAGAAAAGAAAGTTTTTCGGTTTCTCACTGAAAGATACAAAGTAAAGCATTTGAAGCCTGATGTATCGTCTTCATGGCTTCACCTTGTGGATCTTATCATTGCATTTGACAAAAAGATGCAATCCCTTCTCAATCTGGATACTTGTTTTTTGGCAGTTCCTGGGAGTTTTGAAGGGCTCTCAAGAGGCGTCTCAGTTCTATCAATATTTTGTAATAGGCCTGATTGGCTGAAGGTCTGGGCAAAAATAGAGTTCAAAAATGCATGGAAGAAACTTAAACCTGAACTGATAGAGGAGAAAGCGTGGATTACTTCTAAGAAATGTATATCTGGGATTGACACTGAGCAGGAGTTTCTGCTATTGACTGTTGAGGATCTCAAAGCTCCACCTATTGCAGAGTTTTTTCTTAAAATTATTTGGGAAATGATTGAACGCTGCCAAACTATGCCATCCAGTTTATCACATGCACAATTTATTAGATTTACTGCAGGAAGATTCCTCTGGTATTTCTTTAAGCAATTACTTTTTCGGTTCAAGGCAACTGAATTGTGCATTGATAGTTCTGATGATGTTGCCATAGTTAGAGTGTGTGGATTAATAAATGCTGCCAGATATATTTGGATTAAATTGCAAGAATGGAGTGATGTTGCGGACTTTTTGGAGATGAAAATTGTTGAAAATGATTCTAGCAAGCCCACACAAGATGATACAATGGATAATGACTGTTTTTTTGACGAAGAAATAAGAAGCTTGTCTGAAATGGAAACCAACTGGCTTATGGAAATTATAGCAGTTGTTCTTCGACAGTTTGAAATGCTATCTTGGAAGTATGTTCAAAACAATGATAGTTTTGAGGATGACCAAGATTATACAAATCCAGTAGAGGATGTTGATTTAGTAGTCTCCAATGATTTTGTTGAAGCTTTAGATGCTTTAGATAGTTGGCTTCATACTGTGAAGATAAGTCTCAATAAAAAGGATTTCTTGGATTTGTGGAGAAGCATTGCTGAGGGGCTAGATCATTACATTTCATGCAGCATCGTCAGAAGTGAGAATTGGTTCTCTAAGATGGGCGTCTATCAATTTGAAGCTGATATGCAAGCACTAATTTTTATATTTCAGCCTTATTGTGCTCGCCCACAAGCATTTTTTCCTTGTATTAATGAGATTCTTAAGCTTTTGAAACTGAAAAAAGAAGAGGTAAAGCTAATGCAAACATTTTTGTCCAACAATCAAAATGGATCAGAGTGTTTGCATCTTTATGGAATTTATCATCTATCAGTTAATCAAATTCTTCAAGTTCTTAGATACAAAATTTGGGTTGGTTGA
Predicted protein sequences of Glyma13g04020
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma13g04020.1 sequence type=predicted peptide gene model=Glyma13g04020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEPPPSHPLPRLPSTADLTPQHAAFLDQHFRTKRDLSRESSNLPLSSSLWQQCSELESRLLQYLTKRTISWISRSFSVRSSLQQLSLALQSLSLCTSPQGIGSKRFRWVLSEEIPRLANEMNRIESLRCYLETAVQLEALVGDLEDAALFVIACHTGNMFSSKLLISPISEDAATKHDKLLQAIKAMSDIEEVLVGVVKFHPQWHCLLKSVDTRVDKILSALRPQALADHRALLISLGWPPKLISLKNGSDHITSLPNPLILMQEDKRRNYSQSFIALCALQHLQNRREERQLNSNLIKRDTQNIQLWAIDELVSPIASRMECHFTKWSEQPEYMFALAYKVTRDFISGIDDVLQPLIDKARLISCSAKDAWVSAMVQMLSGFLEKKVFRFLTERYKVKHLKPDVSSSWLHLVDLIIAFDKKMQSLLNLDTCFLAVPGSFEGLSRGVSVLSIFCNRPDWLKVWAKIEFKNAWKKLKPELIEEKAWITSKKCISGIDTEQEFLLLTVEDLKAPPIAEFFLKIIWEMIERCQTMPSSLSHAQFIRFTAGRFLWYFFKQLLFRFKATELCIDSSDDVAIVRVCGLINAARYIWIKLQEWSDVADFLEMKIVENDSSKPTQDDTMDNDCFFDEEIRSLSEMETNWLMEIIAVVLRQFEMLSWKYVQNNDSFEDDQDYTNPVEDVDLVVSNDFVEALDALDSWLHTVKISLNKKDFLDLWRSIAEGLDHYISCSIVRSENWFSKMGVYQFEADMQALIFIFQPYCARPQAFFPCINEILKLLKLKKEEVKLMQTFLSNNQNGSECLHLYGIYHLSVNQILQVLRYKIWVG*
>Glyma13g04020.2 sequence type=predicted peptide gene model=Glyma13g04020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MFSSKLLISPISEDAATKHDKLLQAIKAMSDIEEVLVGVVKFHPQWHCLLKSVDTRVDKILSALRPQALADHRALLISLGWPPKLISLKNGSDHITSLPNPLILMQEDKRRNYSQSFIALCALQHLQNRREERQLNSNLIKRDTQNIQLWAIDELVSPIASRMECHFTKWSEQPEYMFALAYKVTRDFISGIDDVLQPLIDKARLISCSAKDAWVSAMVQMLSGFLEKKVFRFLTERYKVKHLKPDVSSSWLHLVDLIIAFDKKMQSLLNLDTCFLAVPGSFEGLSRGVSVLSIFCNRPDWLKVWAKIEFKNAWKKLKPELIEEKAWITSKKCISGIDTEQEFLLLTVEDLKAPPIAEFFLKIIWEMIERCQTMPSSLSHAQFIRFTAGRFLWYFFKQLLFRFKATELCIDSSDDVAIVRVCGLINAARYIWIKLQEWSDVADFLEMKIVENDSSKPTQDDTMDNDCFFDEEIRSLSEMETNWLMEIIAVVLRQFEMLSWKYVQNNDSFEDDQDYTNPVEDVDLVVSNDFVEALDALDSWLHTVKISLNKKDFLDLWRSIAEGLDHYISCSIVRSENWFSKMGVYQFEADMQALIFIFQPYCARPQAFFPCINEILKLLKLKKEEVKLMQTFLSNNQNGSECLHLYGIYHLSVNQILQVLRYKIWVG*