Glyma13g04000 - SoyBase

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Report for Sequence Feature Glyma13g04000

Feature Type:	gene_model
Chromosome:	Gm13
Start:	4224687
stop:	4225600
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g04000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G35732	AT	Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G04795.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). \| chr5:13897961-13898263 FORWARD LENGTH=100	SoyBase	E_val: 2.00E-23	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1LWB4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LWB4_SOYBN	SoyBase	E_val: 4.00E-73	ISS
UniRef100_Q94JV8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT2g04793 n=1 Tax=Arabidopsis thaliana RepID=Q94JV8_ARATH	SoyBase	E_val: 6.00E-17	ISS

Expression Patterns of Glyma13g04000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g04000 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g073800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g04000

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g04000

Limit To All Plant Sequences

>Glyma13g04000.1   sequence type=CDS   gene model=Glyma13g04000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGCGCCTTGTGGCTGCGTTGACCAGGAAACTTCAAAACACAAAGAAGGGTTCAAGGGTGGCCGATGAGAACATGTTTGAGGCTGCAAATGGGGTCGAGCTAGCCATGTTTCGACACGATAGAGGAAGAAGAGACCATGGTTGGAGTGGAATCTCACTTATATATGGCATTCTTCATGCCCCCATATCAATCCTCTCATGCGTGTCTCATCCTCAAGCAAACGGGTCAGATGGGGTTTGGGTGTCTGGTGAATTTGTTCAGATTTCTGAAATGAATCATCTAATGGTGAATGATAGCATGAGATATGCAATTTTGATGTAG

Predicted protein sequences of Glyma13g04000

Limit To All Plant Sequences

>Glyma13g04000.1   sequence type=predicted peptide   gene model=Glyma13g04000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWRLVAALTRKLQNTKKGSRVADENMFEAANGVELAMFRHDRGRRDHGWSGISLIYGILHAPISILSCVSHPQANGSDGVWVSGEFVQISEMNHLMVNDSMRYAILM*

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