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Integrating Genetics and Genomics to Advance Soybean Research


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Report for Sequence Feature Glyma13g03940

Feature Type:gene_model
Chromosome:Gm13
Start:4175587
stop:4178013
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g03940
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G24570AT Annotation by Michelle Graham. TAIR10: Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein | chr3:8966675-8968530 REVERSE LENGTH=235 SoyBaseE_val: 1.00E-103ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005778GO-cc Annotation by Michelle Graham. GO Cellular Compartment: peroxisomal membrane SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG1944 KOG Peroxisomal membrane protein MPV17 and related proteins JGI ISS
PTHR11266Panther PEROXISOMAL MEMBRANE PROTEIN 2, PXMP2 JGI ISS
PTHR11266:SF4Panther PXMP-2 - RELATED JGI ISS
PF04117PFAM Mpv17 / PMP22 family JGI ISS
UniRef100_G7L8X0UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein SYM1 n=1 Tax=Medicago truncatula RepID=G7L8X0_MEDTR SoyBaseE_val: 6.00E-112ISS
UniRef100_I1LWB2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LWB2_SOYBN SoyBaseE_val: 9.00E-157ISS

Expression Patterns of Glyma13g03940
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g03940 not represented in the dataset
Glyma13g03940 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g03940 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g074500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g03940
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g03940
>Glyma13g03940.1   sequence type=CDS   gene model=Glyma13g03940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGAAGGTGTGGAACTGGTACCAAAATTGCCTTTCTGTTCATCCAGTAAAGACCCAAGCCATCAGTTCTGCCATTCTCTGGGGCGTTGGATATCTTTCAGCTCAGTACATCACTCATTCAGCTGCAAAAAAACCCCTTCAACTATCTGATTCAGATGCTAAATTTACGATAAACTGGAATCGCTTGGTTGTTACAAGTATGTTTGGATTCGGTTTCGTTGGACCAGTGGGCCACTTCTGGTATGAAGGTTTGGACAAATTTATAAGGTTCAAGCTTCAACTAAAGCCAAAGTCTGTGCGTTCCGTGGCCACTAAAGTGGCAATGGATGGCATAATTTTTGGTCCTCTCCATTTGTTTGTCTTCTTTACTTACATGGGATTATGTGCTGGCAAGAATGTTGCTCAAGTGAAGGATGACTTGAAGAGGAATTACGTCCCGGCCCTGATTTTAGAAGGCGGTGTGTGGCCCGTTGTCCAGGTTTTTAATTTTTGGTATCTTCCCGTGAAGTACCAGCTTCTCTATGTAAACTTGTTCTGCTTGCTGGACAGTGTTTTTCTGTCATGGTTGGAGCAACAGAAGGACACACCTTGGAAGAAATGGTTTGCATCATTTCATTCCACGAATGAAAAAGGAGGTCGATGTTGA
Predicted protein sequences of Glyma13g03940
>Glyma13g03940.1   sequence type=predicted peptide   gene model=Glyma13g03940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMKVWNWYQNCLSVHPVKTQAISSAILWGVGYLSAQYITHSAAKKPLQLSDSDAKFTINWNRLVVTSMFGFGFVGPVGHFWYEGLDKFIRFKLQLKPKSVRSVATKVAMDGIIFGPLHLFVFFTYMGLCAGKNVAQVKDDLKRNYVPALILEGGVWPVVQVFNFWYLPVKYQLLYVNLFCLLDSVFLSWLEQQKDTPWKKWFASFHSTNEKGGRC*






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