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Report for Sequence Feature Glyma13g03920
Feature Type: gene_model
Chromosome: Gm13
Start: 4139185
stop: 4147410
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma13g03920
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G53530 AT
Annotation by Michelle Graham. TAIR10: vacuolar protein sorting 26A | chr5:21746275-21748156 REVERSE LENGTH=302
SoyBase E_val: 4.00E-180 ISS
GO:0000902 GO-bp
Annotation by Michelle Graham. GO Biological Process: cell morphogenesis
SoyBase N/A ISS
GO:0006623 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole
SoyBase N/A ISS
GO:0006886 GO-bp
Annotation by Michelle Graham. GO Biological Process: intracellular protein transport
SoyBase N/A ISS
GO:0007034 GO-bp
Annotation by Michelle Graham. GO Biological Process: vacuolar transport
SoyBase N/A ISS
GO:0008333 GO-bp
Annotation by Michelle Graham. GO Biological Process: endosome to lysosome transport
SoyBase N/A ISS
GO:0016049 GO-bp
Annotation by Michelle Graham. GO Biological Process: cell growth
SoyBase N/A ISS
GO:0016192 GO-bp
Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport
SoyBase N/A ISS
GO:0016197 GO-bp
Annotation by Michelle Graham. GO Biological Process: endosomal transport
SoyBase N/A ISS
GO:0042147 GO-bp
Annotation by Michelle Graham. GO Biological Process: retrograde transport, endosome to Golgi
SoyBase N/A ISS
GO:0048193 GO-bp
Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport
SoyBase N/A ISS
GO:0005771 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: multivesicular body
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0030904 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: retromer complex
SoyBase N/A ISS
GO:0043231 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: intracellular membrane-bounded organelle
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
KOG3063
KOG
Membrane coat complex Retromer, subunit VPS26
JGI ISS
PTHR12233 Panther
VACUOLAR PROTEIN SORTING 26 RELATED
JGI ISS
PF03643 PFAM
Vacuolar protein sorting-associated protein 26
JGI ISS
UniRef100_B9T2W4 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Vacuolar protein sorting 26, vps26, putative n=1 Tax=Ricinus communis RepID=B9T2W4_RICCO
SoyBase E_val: 0 ISS
UniRef100_C6TCH4 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TCH4_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma13g03920
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma13g03920
Paralog Evidence Comments
Glyma20g10866 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma13g03920 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.13g074700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma13g03920
Transcripts of Glyma13g03920
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g03920.2 sequence type=transcript gene model=Glyma13g03920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
CGCACGTTCCTAACCTTCATCACACTGTGGACTGTTTGTTCTGTTGCATTTGCATGTGGTGCCATTTTCCATTTCCAGAACCTTTTTTTTTCCTGAATTGTTTTCCTTTTCTATCATTTTCTCTTTCTCTCGATCATCACTCTCTCTGAAAAATCATGGTGGGTTTCTCTTTCTGAAGGGTAAAATAAAGAAACGTGAATGCAATTGGATCATCAATTTGTTATTGCTGGTGTTGTTTTTGCATTGCAATTGTTTCATGAGATGTGCTAATCAATTTGCCTCACATGTGTGCATTGTTGTTTGATCAGAATATAATTGCGGGAGCTTTCAAGCCCCCATGCAAGATCTCAATCTGTCTTGCTGATGGAAGTACTCCCAAGCAGGTGTGCTGTGCTGCAATTCACGGATGAATATAGTGATCTGAATGAATGAAAATGATCATGAACCCTTCTTTTTCCATTATGTTTAAAACTTGTTCTTTTTGGGTTTTCCTTATTCTAGTCTATTCATGTGAAAGTTGGACCTCTGTATGAGTATCTCAATAAGAAGATTTTCATAAAGGAAGCTCCTTCTGGCCCTTTTCATCACAAAGGGGTTTCGGAGTCAGAGTACCGTACGTACCCAGTTAAACATTTTACTTATCACTGTCATAAATGGTTCGCAACTGCAATTGTGGATGCAATTGTCAAGATTTTTGGGTATCTGTAACCGCATTGGGACCACAATTGTGGCTGGATCAGCTATATTTGTTTGCAATTTTCCACAATATCAAGGATTATGGCTAAATCACAACCACAACTTCAATTTAAAACTTTGGACTCACGGAATATCTAAATGGTTTCAATATCTGAATCCATGTGGGTTTCTATGTTTGGTCCTAACTCCTAATCTGACCCACATATGACATGAAATTATAAGGTAATGTCATATAGTGTAATGACTCAGTGATCTGATTGGCATGGTTATTTGTGATAAATAGTATAATTTATGTAACAGAAAGTGGCTAGTCCGTTCTTTATATACCGATGTTCAACTTCTGAATTTTTATTTGAGATTTGGGATGTCTGGTTAGGTATTGTGTTGTTTAATCTTTCTTATAGTAACATGTTAATCCCTCAAAGTATATTCTTTCTATGGAAATACAAACTTTTGTTTGTTTTAAACTTCCTCATTATTGTTATTCAGATATTATCACTATGACACTAAGTAAGATTTGGAATTAGCTTCCAGGATGCTGAGGAAGGGTATTTCATTTGTTTTTCAAAAGCTTTAACAAGGCCACCTTGATTTACACTTTTGTACCATCTCGTGTTTGCTAGGTTCGCATAAAGAAGGAAAATGGCCAAATGGTCATGGTTCCTCTCTTTCAAAGTCAGGAGAATATAGTTGGGGAGGTTATTATTGAACCTTCAAATGGGAAGAAGGTTGAACATAATGGTGTAAAAATTGAGCTTCTTGGTCAAATAGAGTTATATTTTGATAGAGGCAACTTCTATGACTTTAGTTCTCTTGTACGCGAACTTGATGTTCCTGGCAACTTGTATGAAAGGAAAACATACCCGTTTGAATTCTCTACTGTTGAAATGCCGTATGAATCATACAATGGAATCAATGTTAGGCTTAGGTACATTTTGAAAGTGACAATTAGTCGAAATTATGTCAACAACATTGTGGAATACATGGATTTTGTTGTACGCAATTATGCTCCAGCTCCACCTATTAATAACAGCATTAAGATGGAAGTAGGAATTGAAGAATGCTTACACATAGAGTTTGAATACGGCAAGAGCAAGTATCATCTGAAGGATGTCATTGTTGGCAAAATATATTTTCTTCTGGTGAGAATCAAAATAAAAACCATGGAACTCGAAGTCAGGCGCCGAGAGTCAACTGGATCTGGGACCAATACATATGTTGAGACAGAGACCCTTTCAAAGTTTGAGTTGATGGATGGTGTTCCAGTCCGAGGAGAATCAATTCCTGTGAGATTGTTCCTCAGTCCATATGAGTTGACCCCTACATACCACAACATCAATAACAAGTTCAGTGTGAAGTATTTTCTAAATCTTGTTCTTGTGGATGAAGAGGACAGACGGTACTTCAAGCAGCAAGAAATCACAGTATATCGGCTAAGTGAAAACTCCTGATTCTTATGCCACCGGATTATTAGGATTTCTTCTGTTTTTGTCACCACTTGTTCTGAGTGGAAAGTTTTCTAATAATTTTACTGTAGTTACTAGAAAGTGGGTAATAGGGGTATTATTCTATTCTATTTAAAAAACTTCCTTCACGGGTATGGAACAAACTATTTCCTAATTTTTAACATTTTAACATCCAACTTGACTTATTTTACACTACAAATGAATTCCATAATACATACCGTACAAGTTGAGTTAATGGTAGTTTATATAGGAGACAATTAATTCAATTTTCATTGTAAAGCAATTTCAAGATGAG
Coding sequences of Glyma13g03920
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g03920.1 sequence type=CDS gene model=Glyma13g03920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAATATAATTGCGGGAGCTTTCAAGCCCCCATGCAAGATCTCAATCTGTCTTGCTGATGGAAGTACTCCCAAGCAGGTTCGCATAAAGAAGGAAAATGGCCAAATGGTCATGGTTCCTCTCTTTCAAAGTCAGGAGAATATAGTTGGGGAGGTTATTATTGAACCTTCAAATGGGAAGAAGGTTGAACATAATGGTGTAAAAATTGAGCTTCTTGGTCAAATAGAGTTATATTTTGATAGAGGCAACTTCTATGACTTTAGTTCTCTTGTACGCGAACTTGATGTTCCTGGCAACTTGTATGAAAGGAAAACATACCCGTTTGAATTCTCTACTGTTGAAATGCCGTATGAATCATACAATGGAATCAATGTTAGGCTTAGGTACATTTTGAAAGTGACAATTAGTCGAAATTATGTCAACAACATTGTGGAATACATGGATTTTGTTGTACGCAATTATGCTCCAGCTCCACCTATTAATAACAGCATTAAGATGGAAGTAGGAATTGAAGAATGCTTACACATAGAGTTTGAATACGGCAAGAGCAAGTATCATCTGAAGGATGTCATTGTTGGCAAAATATATTTTCTTCTGGTGAGAATCAAAATAAAAACCATGGAACTCGAAGTCAGGCGCCGAGAGTCAACTGGATCTGGGACCAATACATATGTTGAGACAGAGACCCTTTCAAAGTTTGAGTTGATGGATGGTGTTCCAGTCCGAGGAGAATCAATTCCTGTGAGATTGTTCCTCAGTCCATATGAGTTGACCCCTACATACCACAACATCAATAACAAGTTCAGTGTGAAGTATTTTCTAAATCTTGTTCTTGTGGATGAAGAGGACAGACGGTACTTCAAGCAGCAAGAAATCACAGTATATCGGCTAAGTGAAAACTCCTGA
>Glyma13g03920.2 sequence type=CDS gene model=Glyma13g03920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGTCATGGTTCCTCTCTTTCAAAGTCAGGAGAATATAGTTGGGGAGGTTATTATTGAACCTTCAAATGGGAAGAAGGTTGAACATAATGGTGTAAAAATTGAGCTTCTTGGTCAAATAGAGTTATATTTTGATAGAGGCAACTTCTATGACTTTAGTTCTCTTGTACGCGAACTTGATGTTCCTGGCAACTTGTATGAAAGGAAAACATACCCGTTTGAATTCTCTACTGTTGAAATGCCGTATGAATCATACAATGGAATCAATGTTAGGCTTAGGTACATTTTGAAAGTGACAATTAGTCGAAATTATGTCAACAACATTGTGGAATACATGGATTTTGTTGTACGCAATTATGCTCCAGCTCCACCTATTAATAACAGCATTAAGATGGAAGTAGGAATTGAAGAATGCTTACACATAGAGTTTGAATACGGCAAGAGCAAGTATCATCTGAAGGATGTCATTGTTGGCAAAATATATTTTCTTCTGGTGAGAATCAAAATAAAAACCATGGAACTCGAAGTCAGGCGCCGAGAGTCAACTGGATCTGGGACCAATACATATGTTGAGACAGAGACCCTTTCAAAGTTTGAGTTGATGGATGGTGTTCCAGTCCGAGGAGAATCAATTCCTGTGAGATTGTTCCTCAGTCCATATGAGTTGACCCCTACATACCACAACATCAATAACAAGTTCAGTGTGAAGTATTTTCTAAATCTTGTTCTTGTGGATGAAGAGGACAGACGGTACTTCAAGCAGCAAGAAATCACAGTATATCGGCTAAGTGAAAACTCCTGA
Predicted protein sequences of Glyma13g03920
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma13g03920.1 sequence type=predicted peptide gene model=Glyma13g03920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MNIIAGAFKPPCKISICLADGSTPKQVRIKKENGQMVMVPLFQSQENIVGEVIIEPSNGKKVEHNGVKIELLGQIELYFDRGNFYDFSSLVRELDVPGNLYERKTYPFEFSTVEMPYESYNGINVRLRYILKVTISRNYVNNIVEYMDFVVRNYAPAPPINNSIKMEVGIEECLHIEFEYGKSKYHLKDVIVGKIYFLLVRIKIKTMELEVRRRESTGSGTNTYVETETLSKFELMDGVPVRGESIPVRLFLSPYELTPTYHNINNKFSVKYFLNLVLVDEEDRRYFKQQEITVYRLSENS*
>Glyma13g03920.2 sequence type=predicted peptide gene model=Glyma13g03920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MVMVPLFQSQENIVGEVIIEPSNGKKVEHNGVKIELLGQIELYFDRGNFYDFSSLVRELDVPGNLYERKTYPFEFSTVEMPYESYNGINVRLRYILKVTISRNYVNNIVEYMDFVVRNYAPAPPINNSIKMEVGIEECLHIEFEYGKSKYHLKDVIVGKIYFLLVRIKIKTMELEVRRRESTGSGTNTYVETETLSKFELMDGVPVRGESIPVRLFLSPYELTPTYHNINNKFSVKYFLNLVLVDEEDRRYFKQQEITVYRLSENS*