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Report for Sequence Feature Glyma13g03920

Feature Type:gene_model
Chromosome:Gm13
Start:4139185
stop:4147410
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G53530AT Annotation by Michelle Graham. TAIR10: vacuolar protein sorting 26A | chr5:21746275-21748156 REVERSE LENGTH=302 SoyBaseE_val: 4.00E-180ISS
GO:0000902GO-bp Annotation by Michelle Graham. GO Biological Process: cell morphogenesis SoyBaseN/AISS
GO:0006623GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole SoyBaseN/AISS
GO:0006886GO-bp Annotation by Michelle Graham. GO Biological Process: intracellular protein transport SoyBaseN/AISS
GO:0007034GO-bp Annotation by Michelle Graham. GO Biological Process: vacuolar transport SoyBaseN/AISS
GO:0008333GO-bp Annotation by Michelle Graham. GO Biological Process: endosome to lysosome transport SoyBaseN/AISS
GO:0016049GO-bp Annotation by Michelle Graham. GO Biological Process: cell growth SoyBaseN/AISS
GO:0016192GO-bp Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport SoyBaseN/AISS
GO:0016197GO-bp Annotation by Michelle Graham. GO Biological Process: endosomal transport SoyBaseN/AISS
GO:0042147GO-bp Annotation by Michelle Graham. GO Biological Process: retrograde transport, endosome to Golgi SoyBaseN/AISS
GO:0048193GO-bp Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport SoyBaseN/AISS
GO:0005771GO-cc Annotation by Michelle Graham. GO Cellular Compartment: multivesicular body SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0030904GO-cc Annotation by Michelle Graham. GO Cellular Compartment: retromer complex SoyBaseN/AISS
GO:0043231GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular membrane-bounded organelle SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG3063 KOG Membrane coat complex Retromer, subunit VPS26 JGI ISS
PTHR12233Panther VACUOLAR PROTEIN SORTING 26 RELATED JGI ISS
PF03643PFAM Vacuolar protein sorting-associated protein 26 JGI ISS
UniRef100_B9T2W4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Vacuolar protein sorting 26, vps26, putative n=1 Tax=Ricinus communis RepID=B9T2W4_RICCO SoyBaseE_val: 0ISS
UniRef100_C6TCH4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TCH4_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g03920 not represented in the dataset

Glyma13g03920 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma20g10866 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g074700 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma13g03920.2   sequence type=transcript   gene model=Glyma13g03920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGCACGTTCCTAACCTTCATCACACTGTGGACTGTTTGTTCTGTTGCATTTGCATGTGGTGCCATTTTCCATTTCCAGAACCTTTTTTTTTCCTGAATTGTTTTCCTTTTCTATCATTTTCTCTTTCTCTCGATCATCACTCTCTCTGAAAAATCATGGTGGGTTTCTCTTTCTGAAGGGTAAAATAAAGAAACGTGAATGCAATTGGATCATCAATTTGTTATTGCTGGTGTTGTTTTTGCATTGCAATTGTTTCATGAGATGTGCTAATCAATTTGCCTCACATGTGTGCATTGTTGTTTGATCAGAATATAATTGCGGGAGCTTTCAAGCCCCCATGCAAGATCTCAATCTGTCTTGCTGATGGAAGTACTCCCAAGCAGGTGTGCTGTGCTGCAATTCACGGATGAATATAGTGATCTGAATGAATGAAAATGATCATGAACCCTTCTTTTTCCATTATGTTTAAAACTTGTTCTTTTTGGGTTTTCCTTATTCTAGTCTATTCATGTGAAAGTTGGACCTCTGTATGAGTATCTCAATAAGAAGATTTTCATAAAGGAAGCTCCTTCTGGCCCTTTTCATCACAAAGGGGTTTCGGAGTCAGAGTACCGTACGTACCCAGTTAAACATTTTACTTATCACTGTCATAAATGGTTCGCAACTGCAATTGTGGATGCAATTGTCAAGATTTTTGGGTATCTGTAACCGCATTGGGACCACAATTGTGGCTGGATCAGCTATATTTGTTTGCAATTTTCCACAATATCAAGGATTATGGCTAAATCACAACCACAACTTCAATTTAAAACTTTGGACTCACGGAATATCTAAATGGTTTCAATATCTGAATCCATGTGGGTTTCTATGTTTGGTCCTAACTCCTAATCTGACCCACATATGACATGAAATTATAAGGTAATGTCATATAGTGTAATGACTCAGTGATCTGATTGGCATGGTTATTTGTGATAAATAGTATAATTTATGTAACAGAAAGTGGCTAGTCCGTTCTTTATATACCGATGTTCAACTTCTGAATTTTTATTTGAGATTTGGGATGTCTGGTTAGGTATTGTGTTGTTTAATCTTTCTTATAGTAACATGTTAATCCCTCAAAGTATATTCTTTCTATGGAAATACAAACTTTTGTTTGTTTTAAACTTCCTCATTATTGTTATTCAGATATTATCACTATGACACTAAGTAAGATTTGGAATTAGCTTCCAGGATGCTGAGGAAGGGTATTTCATTTGTTTTTCAAAAGCTTTAACAAGGCCACCTTGATTTACACTTTTGTACCATCTCGTGTTTGCTAGGTTCGCATAAAGAAGGAAAATGGCCAAATGGTCATGGTTCCTCTCTTTCAAAGTCAGGAGAATATAGTTGGGGAGGTTATTATTGAACCTTCAAATGGGAAGAAGGTTGAACATAATGGTGTAAAAATTGAGCTTCTTGGTCAAATAGAGTTATATTTTGATAGAGGCAACTTCTATGACTTTAGTTCTCTTGTACGCGAACTTGATGTTCCTGGCAACTTGTATGAAAGGAAAACATACCCGTTTGAATTCTCTACTGTTGAAATGCCGTATGAATCATACAATGGAATCAATGTTAGGCTTAGGTACATTTTGAAAGTGACAATTAGTCGAAATTATGTCAACAACATTGTGGAATACATGGATTTTGTTGTACGCAATTATGCTCCAGCTCCACCTATTAATAACAGCATTAAGATGGAAGTAGGAATTGAAGAATGCTTACACATAGAGTTTGAATACGGCAAGAGCAAGTATCATCTGAAGGATGTCATTGTTGGCAAAATATATTTTCTTCTGGTGAGAATCAAAATAAAAACCATGGAACTCGAAGTCAGGCGCCGAGAGTCAACTGGATCTGGGACCAATACATATGTTGAGACAGAGACCCTTTCAAAGTTTGAGTTGATGGATGGTGTTCCAGTCCGAGGAGAATCAATTCCTGTGAGATTGTTCCTCAGTCCATATGAGTTGACCCCTACATACCACAACATCAATAACAAGTTCAGTGTGAAGTATTTTCTAAATCTTGTTCTTGTGGATGAAGAGGACAGACGGTACTTCAAGCAGCAAGAAATCACAGTATATCGGCTAAGTGAAAACTCCTGATTCTTATGCCACCGGATTATTAGGATTTCTTCTGTTTTTGTCACCACTTGTTCTGAGTGGAAAGTTTTCTAATAATTTTACTGTAGTTACTAGAAAGTGGGTAATAGGGGTATTATTCTATTCTATTTAAAAAACTTCCTTCACGGGTATGGAACAAACTATTTCCTAATTTTTAACATTTTAACATCCAACTTGACTTATTTTACACTACAAATGAATTCCATAATACATACCGTACAAGTTGAGTTAATGGTAGTTTATATAGGAGACAATTAATTCAATTTTCATTGTAAAGCAATTTCAAGATGAG

>Glyma13g03920.1   sequence type=CDS   gene model=Glyma13g03920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATATAATTGCGGGAGCTTTCAAGCCCCCATGCAAGATCTCAATCTGTCTTGCTGATGGAAGTACTCCCAAGCAGGTTCGCATAAAGAAGGAAAATGGCCAAATGGTCATGGTTCCTCTCTTTCAAAGTCAGGAGAATATAGTTGGGGAGGTTATTATTGAACCTTCAAATGGGAAGAAGGTTGAACATAATGGTGTAAAAATTGAGCTTCTTGGTCAAATAGAGTTATATTTTGATAGAGGCAACTTCTATGACTTTAGTTCTCTTGTACGCGAACTTGATGTTCCTGGCAACTTGTATGAAAGGAAAACATACCCGTTTGAATTCTCTACTGTTGAAATGCCGTATGAATCATACAATGGAATCAATGTTAGGCTTAGGTACATTTTGAAAGTGACAATTAGTCGAAATTATGTCAACAACATTGTGGAATACATGGATTTTGTTGTACGCAATTATGCTCCAGCTCCACCTATTAATAACAGCATTAAGATGGAAGTAGGAATTGAAGAATGCTTACACATAGAGTTTGAATACGGCAAGAGCAAGTATCATCTGAAGGATGTCATTGTTGGCAAAATATATTTTCTTCTGGTGAGAATCAAAATAAAAACCATGGAACTCGAAGTCAGGCGCCGAGAGTCAACTGGATCTGGGACCAATACATATGTTGAGACAGAGACCCTTTCAAAGTTTGAGTTGATGGATGGTGTTCCAGTCCGAGGAGAATCAATTCCTGTGAGATTGTTCCTCAGTCCATATGAGTTGACCCCTACATACCACAACATCAATAACAAGTTCAGTGTGAAGTATTTTCTAAATCTTGTTCTTGTGGATGAAGAGGACAGACGGTACTTCAAGCAGCAAGAAATCACAGTATATCGGCTAAGTGAAAACTCCTGA

>Glyma13g03920.2   sequence type=CDS   gene model=Glyma13g03920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTCATGGTTCCTCTCTTTCAAAGTCAGGAGAATATAGTTGGGGAGGTTATTATTGAACCTTCAAATGGGAAGAAGGTTGAACATAATGGTGTAAAAATTGAGCTTCTTGGTCAAATAGAGTTATATTTTGATAGAGGCAACTTCTATGACTTTAGTTCTCTTGTACGCGAACTTGATGTTCCTGGCAACTTGTATGAAAGGAAAACATACCCGTTTGAATTCTCTACTGTTGAAATGCCGTATGAATCATACAATGGAATCAATGTTAGGCTTAGGTACATTTTGAAAGTGACAATTAGTCGAAATTATGTCAACAACATTGTGGAATACATGGATTTTGTTGTACGCAATTATGCTCCAGCTCCACCTATTAATAACAGCATTAAGATGGAAGTAGGAATTGAAGAATGCTTACACATAGAGTTTGAATACGGCAAGAGCAAGTATCATCTGAAGGATGTCATTGTTGGCAAAATATATTTTCTTCTGGTGAGAATCAAAATAAAAACCATGGAACTCGAAGTCAGGCGCCGAGAGTCAACTGGATCTGGGACCAATACATATGTTGAGACAGAGACCCTTTCAAAGTTTGAGTTGATGGATGGTGTTCCAGTCCGAGGAGAATCAATTCCTGTGAGATTGTTCCTCAGTCCATATGAGTTGACCCCTACATACCACAACATCAATAACAAGTTCAGTGTGAAGTATTTTCTAAATCTTGTTCTTGTGGATGAAGAGGACAGACGGTACTTCAAGCAGCAAGAAATCACAGTATATCGGCTAAGTGAAAACTCCTGA

>Glyma13g03920.1   sequence type=predicted peptide   gene model=Glyma13g03920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNIIAGAFKPPCKISICLADGSTPKQVRIKKENGQMVMVPLFQSQENIVGEVIIEPSNGKKVEHNGVKIELLGQIELYFDRGNFYDFSSLVRELDVPGNLYERKTYPFEFSTVEMPYESYNGINVRLRYILKVTISRNYVNNIVEYMDFVVRNYAPAPPINNSIKMEVGIEECLHIEFEYGKSKYHLKDVIVGKIYFLLVRIKIKTMELEVRRRESTGSGTNTYVETETLSKFELMDGVPVRGESIPVRLFLSPYELTPTYHNINNKFSVKYFLNLVLVDEEDRRYFKQQEITVYRLSENS*

>Glyma13g03920.2   sequence type=predicted peptide   gene model=Glyma13g03920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVMVPLFQSQENIVGEVIIEPSNGKKVEHNGVKIELLGQIELYFDRGNFYDFSSLVRELDVPGNLYERKTYPFEFSTVEMPYESYNGINVRLRYILKVTISRNYVNNIVEYMDFVVRNYAPAPPINNSIKMEVGIEECLHIEFEYGKSKYHLKDVIVGKIYFLLVRIKIKTMELEVRRRESTGSGTNTYVETETLSKFELMDGVPVRGESIPVRLFLSPYELTPTYHNINNKFSVKYFLNLVLVDEEDRRYFKQQEITVYRLSENS*







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