Glyma13g03910 - SoyBase

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Report for Sequence Feature Glyma13g03910

Feature Type:	gene_model
Chromosome:	Gm13
Start:	4102456
stop:	4103801
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g03910

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G43810	AT	Annotation by Michelle Graham. TAIR10: calmodulin 7 \| chr3:15664619-15666355 REVERSE LENGTH=149	SoyBase	E_val: 8.00E-87	ISS
GO:0005513	GO-bp	Annotation by Michelle Graham. GO Biological Process: detection of calcium ion	SoyBase	N/A	ISS
GO:0006084	GO-bp	Annotation by Michelle Graham. GO Biological Process: acetyl-CoA metabolic process	SoyBase	N/A	ISS
GO:0009612	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to mechanical stimulus	SoyBase	N/A	ISS
GO:0010099	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of photomorphogenesis	SoyBase	N/A	ISS
GO:0019722	GO-bp	Annotation by Michelle Graham. GO Biological Process: calcium-mediated signaling	SoyBase	N/A	ISS
GO:0019932	GO-bp	Annotation by Michelle Graham. GO Biological Process: second-messenger-mediated signaling	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005509	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calcium ion binding	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG0027	KOG	Calmodulin and related proteins (EF-Hand superfamily)	JGI		ISS
PTHR23050	Panther	CALCIUM BINDING PROTEIN	JGI		ISS
PTHR23050:SF20	Panther	CALMODULIN	JGI		ISS
PF00036	PFAM	EF hand	JGI		ISS
UniRef100_A9NQ02	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Picea sitchensis RepID=A9NQ02_PICSI	SoyBase	E_val: 2.00E-84	ISS
UniRef100_B2CNC1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Calmodulin n=1 Tax=Beta vulgaris RepID=B2CNC1_BETVU	SoyBase	E_val: 3.00E-84	ISS

Expression Patterns of Glyma13g03910

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g03910

Paralog	Evidence	Comments
Glyma20g10820	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g03910 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g074800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g03910

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g03910

Limit To All Plant Sequences

>Glyma13g03910.2   sequence type=CDS   gene model=Glyma13g03910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTTTTGTGGATTTGGAATTTAGTGTTATGGGTTGTAATTTGGAAGGTTGTATTACTACTAAGGAACTTGGGACTGTGATGCGGTCACTAGGGCAAAACCCAACTGAGGCAGAACTGCAGGATATGATTAATGAGGTTGATGCTGATGGCAATGGAACCATCGACTTCCCAGAGTTCCTCAACCTGATGGCTCGCAAGATGAAAGACACCGACTCCGAGGAGGAGCTTAAGGAGGCTTTCCGTGTGTTCGACAAGGATCAGAATGGTTTCATCTCTGCAGCTGAGCTCCGCCATGTCATGACAAATCTTGGGGAGAAGCTGACCGATGAGGAGGTTGATGAGATGATCCGCGAGGCCGACGTCGATGGTGATGGACAGATCAACTATGAGGAGTTCGTCAAAGTCATGATGGCCAAGTGA

Predicted protein sequences of Glyma13g03910

Limit To All Plant Sequences

>Glyma13g03910.2   sequence type=predicted peptide   gene model=Glyma13g03910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVFVDLEFSVMGCNLEGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK*

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