Glyma13g03853 - SoyBase

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Report for Sequence Feature Glyma13g03853

Feature Type:	gene_model
Chromosome:	Gm13
Start:	4045245
stop:	4052004
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g03853

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G22990	AT	Annotation by Michelle Graham. TAIR10: sinapoylglucose 1 \| chr2:9787071-9789925 FORWARD LENGTH=319	SoyBase	E_val: 5.00E-67	ISS
GO:0000096	GO-bp	Annotation by Michelle Graham. GO Biological Process: sulfur amino acid metabolic process	SoyBase	N/A	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0006520	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular amino acid metabolic process	SoyBase	N/A	ISS
GO:0006546	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycine catabolic process	SoyBase	N/A	ISS
GO:0006636	GO-bp	Annotation by Michelle Graham. GO Biological Process: unsaturated fatty acid biosynthetic process	SoyBase	N/A	ISS
GO:0006733	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidoreduction coenzyme metabolic process	SoyBase	N/A	ISS
GO:0006766	GO-bp	Annotation by Michelle Graham. GO Biological Process: vitamin metabolic process	SoyBase	N/A	ISS
GO:0008652	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular amino acid biosynthetic process	SoyBase	N/A	ISS
GO:0009072	GO-bp	Annotation by Michelle Graham. GO Biological Process: aromatic amino acid family metabolic process	SoyBase	N/A	ISS
GO:0009106	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipoate metabolic process	SoyBase	N/A	ISS
GO:0009108	GO-bp	Annotation by Michelle Graham. GO Biological Process: coenzyme biosynthetic process	SoyBase	N/A	ISS
GO:0009117	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleotide metabolic process	SoyBase	N/A	ISS
GO:0009684	GO-bp	Annotation by Michelle Graham. GO Biological Process: indoleacetic acid biosynthetic process	SoyBase	N/A	ISS
GO:0009695	GO-bp	Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process	SoyBase	N/A	ISS
GO:0009698	GO-bp	Annotation by Michelle Graham. GO Biological Process: phenylpropanoid metabolic process	SoyBase	N/A	ISS
GO:0019288	GO-bp	Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway	SoyBase	N/A	ISS
GO:0019344	GO-bp	Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process	SoyBase	N/A	ISS
GO:0019748	GO-bp	Annotation by Michelle Graham. GO Biological Process: secondary metabolic process	SoyBase	N/A	ISS
GO:0044272	GO-bp	Annotation by Michelle Graham. GO Biological Process: sulfur compound biosynthetic process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0004185	GO-mf	Annotation by Michelle Graham. GO Molecular Function: serine-type carboxypeptidase activity	SoyBase	N/A	ISS
GO:0016754	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sinapoylglucose-malate O-sinapoyltransferase activity	SoyBase	N/A	ISS
PTHR11802	Panther	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	JGI		ISS
PTHR11802:SF7	Panther	SERINE CARBOXYPEPTIDASE I (PLANTS)	JGI		ISS
PF00450	PFAM	Serine carboxypeptidase	JGI		ISS
UniRef100_B9S819	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Serine carboxypeptidase, putative n=1 Tax=Ricinus communis RepID=B9S819_RICCO	SoyBase	E_val: 6.00E-76	ISS
UniRef100_I3SB15	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Lotus japonicus RepID=I3SB15_LOTJA	SoyBase	E_val: 1.00E-115	ISS

Expression Patterns of Glyma13g03853

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g03853 not represented in the dataset	Glyma13g03853 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g03853 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g075200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g03853

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g03853

Limit To All Plant Sequences

>Glyma13g03853.2   sequence type=transcript   gene model=Glyma13g03853   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAGTGGTTTATTGATCATCCAAAGTTTAGCTCAAATCCTTTTTACATTGGTGGTGGCTCATATTCAGGAATGATCACTGGTCCTCTTGTTCAACAAGTATATGAAGGGTTATGTACTCGCGAGCCCAGCTGTTGACGGGTTTCGAGAGCAGAACATGAAAGTTTTATATGCATACCAAAGGAGTCTTATACCAGAAGCGCTCTACAAGTCAATGAAAGAAAATTGTAACGGGGATTATATAAACATTGATCCAGAAAACACAAAGTGTGTCTCAGATTATAGTGTTTATGTTGAGCTTGTTCGTTACATAAACGAACAACAAATTATGGAACCTCTTTGTATTACTACGCCTGGCGTGAATCGAGAAATCCTACAAGAAGTTCAAGATCCTCCAACATTTTGGTGTAGAAGCTATTATCATATCCTTGTTGACACATGGGCAAATGATGAAAATGTGCGGAAGGCCCTTCATGTAAGAGAGGGAACTAAAGAGGAATTCCTGAGATGCAACAGAACCATGGCATACACCACAACTCGGCTAAACACAGTAGAATTTTATCGGAATCTCACTAATGCCAATCTCGAAGCTCTCGTTTACTGTGCTGATCTTGATATGAATGTACCACACCTGGGTACACAATATTGGATCAATTCATTCAACACGAGCATACGTGACAAATGGCGTGCATGGTTTGTTGACGGTCAAGTGGCTGGATACACAGAAGTCCACAAAACGAAAGAAGACCACTACTTAACATATGTGATCGTGAAGGGCGCTGGACATGTGGCCCAGACATTTAAACCCAAGGAAGTCTATCATTTGATCAATAGATGGACGGGTAACAAATTTCAAGTGATGGAAAGGGTAGATATGTTAGAGTTGAGATCGAGAATTGGGGAGACAATACCCATTCGCGCTCCGGACGGTTGTCATGTCTAA

>Glyma13g03853.3   sequence type=transcript   gene model=Glyma13g03853   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAGTGGTTTATTGATCATCCAAAGTTTAGCTCAAATCCTTTTTACATTGGTGGTGGCTCATATTCAGGAATGATCACTGGTCCTCTTGTTCAACAAGTATATGAAGGATACAAAGCAAGACGCAAGCCACTCATGAACATCAAAGGTTATGTACTCGCGAGCCCAGCTGTTGACGGGTTTCGAGAGCAGAACATGAAAGTTTTATATGCATACCAAAGGAGTCTTATACCAGAAGCGCTCTACAAGTCAATGAAAGAAAATTGTAACGGGGATTATATAAACATTGATCCAGAAAACACAAAGTGTGTCTCAGATTATAGTGTTTATGTTGAGCTTGTTCGTTACATAAACGAACAACAAATTATGGAACCTCTTTGTATTACTACGCCTGGCGTGAATCGAGAAATCCTACAAGAAGTTCAAGATCCTCCAACATTTTGGTGTAGAAGCTATTATCATATCCTTGTTGACACATGGGCAAATGATGAAAATGTGCGGAAGGCCCTTCATGTAAGAGAGGGAACTAAAGAGGAATTCCTGAGATGCAACAGAACCATGGCATACACCACAACTCGGCTAAACACAGTAGAATTTTATCGGAATCTCACTAATGCCAATCTCGAAGCTCTCGTTTACTGTGCTGATCTTGATATGAATGTACCACACCTGGGTACACAATATTGGATCAATTCATTCAACACGAGCATACGTGACAAATGGCGTGCATGGTTTGTTGACGGTCAAGTGGCTGGGTAATTAAGTTATAGTAATATTTAATTATACACAGAAGTCCACAAAACGAAAGAAGACCACTACTTAACATATGTGATCGTGAAGGGCGCTGGACATGTGGCCCAGACATTTAAACCCAAGGAAGTCTATCATTTGATCAATAGATGGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

Coding sequences of Glyma13g03853

Limit To All Plant Sequences

>Glyma13g03853.1   sequence type=CDS   gene model=Glyma13g03853   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAGTGGTTTATTGATCATCCAAAGTTTAGCTCAAATCCTTTTTACATTGGTGGTGGCTCATATTCAGGAATGATCACTGGTCCTCTTGTTCAACAAGTATATGAAGGATACAAAGCAAGACGCAAGCCACTCATGAACATCAAAGGTTATGTACTCGCGAGCCCAGCTGTTGACGGGTTTCGAGAGCAGAACATGAAAGTTTTATATGCATACCAAAGGAGTCTTATACCAGAAGCGCTCTACAAGTCAATGAAAGAAAATTGTAACGGGGATTATATAAACATTGATCCAGAAAACACAAAGTGTGTCTCAGATTATAGTGTTTATGTTGAGCTTGTTCGTTACATAAACGAACAACAAATTATGGAACCTCTTTGTATTACTACGCCTGGCGTGAATCGAGAAATCCTACAAGAAGTTCAAGATCCTCCAACATTTTGGTGTAGAAGCTATTATCATATCCTTGTTGACACATGGGCAAATGATGAAAATGTGCGGAAGGCCCTTCATGTAAGAGAGGGAACTAAAGAGGAATTCCTGAGATGCAACAGAACCATGGCATACACCACAACTCGGCTAAACACAGTAGAATTTTATCGGAATCTCACTAATGCCAATCTCGAAGCTCTCGTTTACTGTGCTGATCTTGATATGAATGTACCACACCTGGGTACACAATATTGGATCAATTCATTCAACACGAGCATACGTGACAAATGGCGTGCATGGTTTGTTGACGGTCAAGTGGCTGGATACACAGAAGTCCACAAAACGAAAGAAGACCACTACTTAACATATGTGATCGTGAAGGGCGCTGGACATGTGGCCCAGACATTTAAACCCAAGGAAGTCTATCATTTGATCAATAGATGGACGGGTAACAAATTTCAAGTGATGGAAAGGGTAGATATGTTAGAGTTGAGATCGAGAATTGGGGAGACAATACCCATTCGCGCTCCGGACGGTTGTCATGTCTAA

>Glyma13g03853.2   sequence type=CDS   gene model=Glyma13g03853   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGGGTTATGTACTCGCGAGCCCAGCTGTTGACGGGTTTCGAGAGCAGAACATGAAAGTTTTATATGCATACCAAAGGAGTCTTATACCAGAAGCGCTCTACAAGTCAATGAAAGAAAATTGTAACGGGGATTATATAAACATTGATCCAGAAAACACAAAGTGTGTCTCAGATTATAGTGTTTATGTTGAGCTTGTTCGTTACATAAACGAACAACAAATTATGGAACCTCTTTGTATTACTACGCCTGGCGTGAATCGAGAAATCCTACAAGAAGTTCAAGATCCTCCAACATTTTGGTGTAGAAGCTATTATCATATCCTTGTTGACACATGGGCAAATGATGAAAATGTGCGGAAGGCCCTTCATGTAAGAGAGGGAACTAAAGAGGAATTCCTGAGATGCAACAGAACCATGGCATACACCACAACTCGGCTAAACACAGTAGAATTTTATCGGAATCTCACTAATGCCAATCTCGAAGCTCTCGTTTACTGTGCTGATCTTGATATGAATGTACCACACCTGGGTACACAATATTGGATCAATTCATTCAACACGAGCATACGTGACAAATGGCGTGCATGGTTTGTTGACGGTCAAGTGGCTGGATACACAGAAGTCCACAAAACGAAAGAAGACCACTACTTAACATATGTGATCGTGAAGGGCGCTGGACATGTGGCCCAGACATTTAAACCCAAGGAAGTCTATCATTTGATCAATAGATGGACGGGTAACAAATTTCAAGTGATGGAAAGGGTAGATATGTTAGAGTTGAGATCGAGAATTGGGGAGACAATACCCATTCGCGCTCCGGACGGTTGTCATGTCTAA

>Glyma13g03853.3   sequence type=CDS   gene model=Glyma13g03853   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAGTGGTTTATTGATCATCCAAAGTTTAGCTCAAATCCTTTTTACATTGGTGGTGGCTCATATTCAGGAATGATCACTGGTCCTCTTGTTCAACAAGTATATGAAGGATACAAAGCAAGACGCAAGCCACTCATGAACATCAAAGGTTATGTACTCGCGAGCCCAGCTGTTGACGGGTTTCGAGAGCAGAACATGAAAGTTTTATATGCATACCAAAGGAGTCTTATACCAGAAGCGCTCTACAAGTCAATGAAAGAAAATTGTAACGGGGATTATATAAACATTGATCCAGAAAACACAAAGTGTGTCTCAGATTATAGTGTTTATGTTGAGCTTGTTCGTTACATAAACGAACAACAAATTATGGAACCTCTTTGTATTACTACGCCTGGCGTGAATCGAGAAATCCTACAAGAAGTTCAAGATCCTCCAACATTTTGGTGTAGAAGCTATTATCATATCCTTGTTGACACATGGGCAAATGATGAAAATGTGCGGAAGGCCCTTCATGTAAGAGAGGGAACTAAAGAGGAATTCCTGAGATGCAACAGAACCATGGCATACACCACAACTCGGCTAAACACAGTAGAATTTTATCGGAATCTCACTAATGCCAATCTCGAAGCTCTCGTTTACTGTGCTGATCTTGATATGAATGTACCACACCTGGGTACACAATATTGGATCAATTCATTCAACACGAGCATACGTGACAAATGGCGTGCATGGTTTGTTGACGGTCAAGTGGCTGGGTAA

Predicted protein sequences of Glyma13g03853

Limit To All Plant Sequences

>Glyma13g03853.1   sequence type=predicted peptide   gene model=Glyma13g03853   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
QWFIDHPKFSSNPFYIGGGSYSGMITGPLVQQVYEGYKARRKPLMNIKGYVLASPAVDGFREQNMKVLYAYQRSLIPEALYKSMKENCNGDYINIDPENTKCVSDYSVYVELVRYINEQQIMEPLCITTPGVNREILQEVQDPPTFWCRSYYHILVDTWANDENVRKALHVREGTKEEFLRCNRTMAYTTTRLNTVEFYRNLTNANLEALVYCADLDMNVPHLGTQYWINSFNTSIRDKWRAWFVDGQVAGYTEVHKTKEDHYLTYVIVKGAGHVAQTFKPKEVYHLINRWTGNKFQVMERVDMLELRSRIGETIPIRAPDGCHV*

>Glyma13g03853.2   sequence type=predicted peptide   gene model=Glyma13g03853   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKGYVLASPAVDGFREQNMKVLYAYQRSLIPEALYKSMKENCNGDYINIDPENTKCVSDYSVYVELVRYINEQQIMEPLCITTPGVNREILQEVQDPPTFWCRSYYHILVDTWANDENVRKALHVREGTKEEFLRCNRTMAYTTTRLNTVEFYRNLTNANLEALVYCADLDMNVPHLGTQYWINSFNTSIRDKWRAWFVDGQVAGYTEVHKTKEDHYLTYVIVKGAGHVAQTFKPKEVYHLINRWTGNKFQVMERVDMLELRSRIGETIPIRAPDGCHV*

>Glyma13g03853.3   sequence type=predicted peptide   gene model=Glyma13g03853   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
QWFIDHPKFSSNPFYIGGGSYSGMITGPLVQQVYEGYKARRKPLMNIKGYVLASPAVDGFREQNMKVLYAYQRSLIPEALYKSMKENCNGDYINIDPENTKCVSDYSVYVELVRYINEQQIMEPLCITTPGVNREILQEVQDPPTFWCRSYYHILVDTWANDENVRKALHVREGTKEEFLRCNRTMAYTTTRLNTVEFYRNLTNANLEALVYCADLDMNVPHLGTQYWINSFNTSIRDKWRAWFVDGQVAG*

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