Report for Sequence Feature Glyma13g03820
Feature Type: gene_model
Chromosome: Gm13
Start: 3966468
stop: 3969869
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma13g03820
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G62730 AT
Annotation by Michelle Graham. TAIR10: Terpenoid synthases superfamily protein | chr1:23229204-23230118 REVERSE LENGTH=304
SoyBase E_val: 4.00E-159 ISS
GO:0006457 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein folding
SoyBase N/A ISS
GO:0006626 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein targeting to mitochondrion
SoyBase N/A ISS
GO:0009058 GO-bp
Annotation by Michelle Graham. GO Biological Process: biosynthetic process
SoyBase N/A ISS
GO:0009408 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to heat
SoyBase N/A ISS
GO:0009644 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to high light intensity
SoyBase N/A ISS
GO:0042542 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0016740 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transferase activity
SoyBase N/A ISS
KOG4411
KOG
Phytoene/squalene synthetase
JGI ISS
PTHR21181 Panther
FAMILY NOT NAMED
JGI ISS
PTHR21181:SF4 Panther
gb def: F23N19.9 (Hypothetical protein)
JGI ISS
PF00494 PFAM
Squalene/phytoene synthase
JGI ISS
UniRef100_B6TWB6 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Phytoene synthase n=1 Tax=Zea mays RepID=B6TWB6_MAIZE
SoyBase E_val: 3.00E-122 ISS
UniRef100_I1LWA3 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LWA3_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma13g03820
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Gene model name correspondences to Glyma13g03820 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.13g075600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma13g03820
Coding sequences of Glyma13g03820
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g03820.1 sequence type=CDS gene model=Glyma13g03820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAATGGCGGTTCTGCATCTAGTAACTTAAGGGCAGCTCTCTCCCATTGCGTACAACAAGTGCGAAGTTATGATTATCATCACTATCTTTGCCTTCTCGAGCTGCCTCCGTCTATGCGGAAGGCTGCATTTGCACTCCGTGCCTTGAATGTTGAAACAGCGAGGGCTATGGATGTTGCCTCAGATCCCAGGATCGGCCTTATGCGCCTTGTTTGGTGGCAGGAAGCCATAGACAAAATGTTCGCCAATAAACTGATTGAACACCCAACAGCACAGGCCCTGTCATCTGTGATAGCTGAGACCAAACTCAGCAAGATATGGTTGAAACGATCTGTTGATGCTCGGATCAATGATGCAAGAAGAGAGGTTACTGACATGCCCAAAACTATTGGAGAGTTGGAGAAATATGCCGAGGACACTGTATCAACTATGCTGTACCTAACACTTCAAGCTGGTGGTATCAAGTCTACCGCAGCTGACCATGCAGCCTCACATATTGGCAAGGCTAGTGGCATTCTCTTGCTCCTTAAATCATTGCCCTATCATGCGTCTCACAACCGGCATTTTTCTTACATACCAACTGCAATAGCATCCAAGCATGGGCTAATAGTTAAGCAGGGAGGTGGAGAAGAGAGATGGGTGGATTCTCGCGAAGGCCTTTGTGAAGCAGTTTATGAAATGGCATCAGTAGCCAATGCACACTTAGAGAAGGCCCGGAAGTTAACCGAAAGTGTACCTCCTGAGGCTCTTCCAGTGCTCCTTCCAGCAGTGCCTGCTCAGGTTCTCTTGGATTCCCTAAGAAAGGTCCAATTTGATGTGTTTGACTCAAAGCTAACAAGAGGGGTGCTGGGAATACCTCCTTTGTGGTACCAGCTTAAGCTCAAGTGGACGTCATGGAGAAGGAAATACTAA
Predicted protein sequences of Glyma13g03820
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma13g03820.1 sequence type=predicted peptide gene model=Glyma13g03820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MNGGSASSNLRAALSHCVQQVRSYDYHHYLCLLELPPSMRKAAFALRALNVETARAMDVASDPRIGLMRLVWWQEAIDKMFANKLIEHPTAQALSSVIAETKLSKIWLKRSVDARINDARREVTDMPKTIGELEKYAEDTVSTMLYLTLQAGGIKSTAADHAASHIGKASGILLLLKSLPYHASHNRHFSYIPTAIASKHGLIVKQGGGEERWVDSREGLCEAVYEMASVANAHLEKARKLTESVPPEALPVLLPAVPAQVLLDSLRKVQFDVFDSKLTRGVLGIPPLWYQLKLKWTSWRRKY*