SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G62730 | AT | Annotation by Michelle Graham. TAIR10: Terpenoid synthases superfamily protein | chr1:23229204-23230118 REVERSE LENGTH=304 | SoyBase | E_val: 4.00E-159 | ISS |
| GO:0006457 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein folding | SoyBase | N/A | ISS |
| GO:0006626 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to mitochondrion | SoyBase | N/A | ISS |
| GO:0009058 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biosynthetic process | SoyBase | N/A | ISS |
| GO:0009408 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to heat | SoyBase | N/A | ISS |
| GO:0009644 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to high light intensity | SoyBase | N/A | ISS |
| GO:0042542 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016740 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity | SoyBase | N/A | ISS |
| KOG4411 | KOG | Phytoene/squalene synthetase | JGI | ISS | |
| PTHR21181 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR21181:SF4 | Panther | gb def: F23N19.9 (Hypothetical protein) | JGI | ISS | |
| PF00494 | PFAM | Squalene/phytoene synthase | JGI | ISS | |
| UniRef100_B6TWB6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Phytoene synthase n=1 Tax=Zea mays RepID=B6TWB6_MAIZE | SoyBase | E_val: 3.00E-122 | ISS |
| UniRef100_I1LWA3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LWA3_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma13g03820 not represented in the dataset |
Glyma13g03820 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g075600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g03820.1 sequence type=CDS gene model=Glyma13g03820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATGGCGGTTCTGCATCTAGTAACTTAAGGGCAGCTCTCTCCCATTGCGTACAACAAGTGCGAAGTTATGATTATCATCACTATCTTTGCCTTCTCGAGCTGCCTCCGTCTATGCGGAAGGCTGCATTTGCACTCCGTGCCTTGAATGTTGAAACAGCGAGGGCTATGGATGTTGCCTCAGATCCCAGGATCGGCCTTATGCGCCTTGTTTGGTGGCAGGAAGCCATAGACAAAATGTTCGCCAATAAACTGATTGAACACCCAACAGCACAGGCCCTGTCATCTGTGATAGCTGAGACCAAACTCAGCAAGATATGGTTGAAACGATCTGTTGATGCTCGGATCAATGATGCAAGAAGAGAGGTTACTGACATGCCCAAAACTATTGGAGAGTTGGAGAAATATGCCGAGGACACTGTATCAACTATGCTGTACCTAACACTTCAAGCTGGTGGTATCAAGTCTACCGCAGCTGACCATGCAGCCTCACATATTGGCAAGGCTAGTGGCATTCTCTTGCTCCTTAAATCATTGCCCTATCATGCGTCTCACAACCGGCATTTTTCTTACATACCAACTGCAATAGCATCCAAGCATGGGCTAATAGTTAAGCAGGGAGGTGGAGAAGAGAGATGGGTGGATTCTCGCGAAGGCCTTTGTGAAGCAGTTTATGAAATGGCATCAGTAGCCAATGCACACTTAGAGAAGGCCCGGAAGTTAACCGAAAGTGTACCTCCTGAGGCTCTTCCAGTGCTCCTTCCAGCAGTGCCTGCTCAGGTTCTCTTGGATTCCCTAAGAAAGGTCCAATTTGATGTGTTTGACTCAAAGCTAACAAGAGGGGTGCTGGGAATACCTCCTTTGTGGTACCAGCTTAAGCTCAAGTGGACGTCATGGAGAAGGAAATACTAA
>Glyma13g03820.1 sequence type=predicted peptide gene model=Glyma13g03820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNGGSASSNLRAALSHCVQQVRSYDYHHYLCLLELPPSMRKAAFALRALNVETARAMDVASDPRIGLMRLVWWQEAIDKMFANKLIEHPTAQALSSVIAETKLSKIWLKRSVDARINDARREVTDMPKTIGELEKYAEDTVSTMLYLTLQAGGIKSTAADHAASHIGKASGILLLLKSLPYHASHNRHFSYIPTAIASKHGLIVKQGGGEERWVDSREGLCEAVYEMASVANAHLEKARKLTESVPPEALPVLLPAVPAQVLLDSLRKVQFDVFDSKLTRGVLGIPPLWYQLKLKWTSWRRKY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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