Glyma13g03760 - SoyBase

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Report for Sequence Feature Glyma13g03760

Feature Type:	gene_model
Chromosome:	Gm13
Start:	3829910
stop:	3834531
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g03760

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G07360	AT	Annotation by Michelle Graham. TAIR10: CCCH-type zinc fingerfamily protein with RNA-binding domain \| chr1:2260562-2262795 REVERSE LENGTH=481	SoyBase	E_val: 0	ISS
GO:0042742	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to bacterium	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG0153	KOG	Predicted RNA-binding protein (RRM superfamily)	JGI		ISS
PTHR14089	Panther	CELL CYCLE CONTROL PROTEIN	JGI		ISS
PTHR14089:SF6	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00076	PFAM	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	JGI		ISS
UniRef100_G7J609	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger CCCH domain-containing protein n=1 Tax=Medicago truncatula RepID=G7J609_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1LW99	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LW99_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g03760

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g03760 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g076300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g03760

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g03760

Limit To All Plant Sequences

>Glyma13g03760.1   sequence type=CDS   gene model=Glyma13g03760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGCATAGGTTGCTGAGAGACCACGAGGCCGACGGCTGGGAGCGCTCAGATTTCCCCATCATCTGCGAATCCTGCCTCGGCGACAGCCCCTACGTTCGAATGACAAAAGCAGAGTATGACAAGGAGTGCAAGATTTGTACACGGCCATTCACTGTTTTTAGATGGAGACCTGGTCGAGATGCAAGATATAAGAAAACTGAGATCTGTCAGACATGTAGTAAGTTGAAAAATGTCTGTCAAGTGTGCCTTCTGGATCTTGAATATGGACTACCAGTTCAAGTTCGAGACTCGGCTCTTAGTATTGATTCCAATGATGCCATTCCAAAGAGTGATGTTAATAGGGAGTATTTTGCTGAAGAGCATGACCGTAAGGCTAGAGCTGGTATAGATTATGAATCCTCTTATGGTAAAGTACGCCCAAATGATACTATCCTGAAGCTTCAAAGGACAACTCCATATTACAAAAGAAATCGAGCGCATATTTGCAGTTTCTACATAAGGGGTGAATGTACTAGAGGAGCTGAGTGCCCTTATAGACATGAGATGCCAGTAACTGGGGAATTGTCTCAACAAAATATTAAAGATCGTTATTATGGGGTGAATGATCCAGTGGCTTTGAAGCTACTTGGCAAGGCAGGAGAGATGTCCACTCTGGAGGCTCCTGAGGATGAGAGCATTAAAACTCTTTATGTTGGTGGACTTGATGCTAGGGTCACTGAGCAGGATTTGCGGGATCACTTCTATGCCCATGGAGAAATTGAATCCATCAAAATGGTTCTCCAACGGGCTTGTGCTTTTGTAACATATACAACCAGAGAAGGTGCAGAAAAGGCAGCAGAAGAACTCTCCAACAAATTGGTTATTAAGGGCCTAAGGCTAAAGCTGATGTGGGGCAGGCCTCAGACAACGAAACCCGAGTCTGACGGTTCTGATCAAGCAAGGCAGCAGGCATCTGTAGCTCATAGTGGATTGTTGCCTCGGGCAGTTATATCACAGAAGCAAAGCCAGGACCAAACCCAAGGAATGCTTTACTATAACAATCTACCACCTCCTCAGCAGGAAAGAAGCTACTACCCATCAATGGATCCTCGAAGAATGGGAGCTCTTGTTTCATCCCAAGATGCTCCTGGTGGGCCTTCTGGGTCAGAGGAGAACAACCCCGGTTTGGAGAAGCAGCAAATGCAACATTATGCCCATCCAATGATGCCTCCTCCACCTGGTCAATATCATCAGTATTATCCACCATATGGTTATATGCCACCACCTCCGCCTTATCATCAATACCCACAACCTCCATACAATGCTGCAGCGGCTCCATCCCAGCCACCTGCTGCGGCTCCATCCCAGCCACCAGCTGCAAATCATCCTTATCCACATTCTATGCAGCCAGGTTCTTCATAA

Predicted protein sequences of Glyma13g03760

Limit To All Plant Sequences

>Glyma13g03760.1   sequence type=predicted peptide   gene model=Glyma13g03760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAHRLLRDHEADGWERSDFPIICESCLGDSPYVRMTKAEYDKECKICTRPFTVFRWRPGRDARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDSALSIDSNDAIPKSDVNREYFAEEHDRKARAGIDYESSYGKVRPNDTILKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYRHEMPVTGELSQQNIKDRYYGVNDPVALKLLGKAGEMSTLEAPEDESIKTLYVGGLDARVTEQDLRDHFYAHGEIESIKMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGRPQTTKPESDGSDQARQQASVAHSGLLPRAVISQKQSQDQTQGMLYYNNLPPPQQERSYYPSMDPRRMGALVSSQDAPGGPSGSEENNPGLEKQQMQHYAHPMMPPPPGQYHQYYPPYGYMPPPPPYHQYPQPPYNAAAAPSQPPAAAPSQPPAANHPYPHSMQPGSS*

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