SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G38010 | AT | Annotation by Michelle Graham. TAIR10: Neutral/alkaline non-lysosomal ceramidase | chr2:15906862-15909867 FORWARD LENGTH=757 | SoyBase | E_val: 0 | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0017040 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ceramidase activity | SoyBase | N/A | ISS |
| KOG2232 | KOG | Ceramidases | JGI | ISS | |
| PTHR12670 | Panther | CERAMIDASE | JGI | ISS | |
| PF04734 | PFAM | Neutral/alkaline non-lysosomal ceramidase | JGI | ISS | |
| UniRef100_G7J608 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Neutral ceramidase n=1 Tax=Medicago truncatula RepID=G7J608_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233BDDC | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233BDDC related cluster n=1 Tax=unknown RepID=UPI000233BDDC | SoyBase | E_val: 0 | ISS |
|
Glyma13g03750 not represented in the dataset |
Glyma13g03750 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g076400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g03750.1 sequence type=CDS gene model=Glyma13g03750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTCAGAATTATGTAATTGTTGCATTGGGTTTGGTGGTGTATGCTTGGACATGGATGCAAGGTGCACATGGTGAGTACTTGATTGGGGTTGGGAGTTATGACATGACTGGTCCAGCTGCTGATGTGAACATGATGGGTTATGCCAACCCTTTACAGAACACTGCTGGTATTCATTTCCGGCTAAGAGCTAGAACTTTCATTGTGGCCGAGAGCCTTCAAGGCCCTAGGTTTGTTTTTGTCAACCTTGACGCTGGAATGGCATCCCAGCTTCTTACTATAAAGGTGCTTGAAAGACTTAATTCAAGGTTTGGAAATTTGTATACTGAAGAAAATGTAGCAATCAGTGGGACTCATACACATGCTGGTCCTGGCGGTTACCTGCAATATGTGGTTTACTCTGTGACTTCTCTGGGTTTTGTGAAACAATCCTTTGATGCCATTGCGAATGCAATAGAACAAAGCATTATTCAAGCTCACAACAACCTCAAGCCTGGTTCCATTTTTATGAATACAGGAGATGTGAAGGATGCAGGTATAAACAGGAGTCCAAGTGCATATCTGCAAAACCCTGCAGATGAGAGAGCAAGATATCCCACAAATGTTGACACACAAATGACCCTTATGAGGTTTGTGGATGGAGCAAGTGGTAAAAATATTGGAGCATTCAGCTGGTTTCCAACACATGGAACCTCCATGAGCAATCAAAACAAGCTTATTAGCGGAGATAACAAGGATATTGGACAACTAATGAAGAAAGCACAATCAATTAAGGCCACAAGAGGAAAGGATTGCAAGAAACTAGCAAGCCAAGCGTCCAAGGTGAGGAAGAATGATGGATCCTTATTTGTTGGAGCATTTTGCCAATCAAATGTTGGAGATGTGTCACCAAATGTTCTAGGAGCATTTTGCATCGACAGTGGAAAACCTTGTGACTTCAACCGTTCTTCATGCCATGGCAATGACCAACTTTGTGTAGGCAGGGGACCCGGGTACCCAGACGAAATATTAAGCACAAAGATTATAGGTGAAAGGCAATTCAAAACTGCTGTGAAACTGTTTGAGTCTACTTCAGAGGAACTGTCTGGGAAGATTGACTACCGCCATGTGTACCTGAACTTCACAGACATTGAAGTTGAATTGGACAGCAACAAGGTGGTTAAAACATGCCCTGCAGCACTTGGTCCTGGTTTTGCAGCAGGCACTACAGATGGGCCAGGTCTTTTTGGGTTTCAACAAGGTGATACAAAGATCAATCCATTTTGGAAGAATGTGAGAGATTTTCTGACAAAACCAAGTCAATATCAAGTGGACTGCCAAAACCCAAAGCCAGTTCTGTTGAGCACCGGCGAAATGTTTTATCCTTATCCTTGGGCGCCAGCAATTCTTCCAATCCAAATCCTAAGGCTGGGAAAGTTGATCATTCTTTCTGTACCAGGAGAGTTGACAACAATGGCTGGCAGAAGGCTAAGGGAGGCAGTGAAGGAGACATTAATATCCAGCAGCAATGGAGAATTCGATGATGAAACACATGTGGTTATAGCAGGACTGACAAATACTTACTCACAATATATTGCTACTTTTGAAGAGTACCAGCAACAACGGTATGAGGCTGCTTCAACATTGTATGGTCCTCACACATTATCAGCATACATCCAAGAATTTAAGAAACTAGCACAAGCAATGGCTGAAGGAGAGAACATCACTATAAAAGGTCCTTCTCCGCCAGATCTCTCATCTGTACAAATAAGCTTCTTACTTGATCCCCTTGGAGAATCACCTCCAAAAGGAGTCAAATTTGGTGACATAAAGGAAGACGTGGCGTTTCCTAAAAGAGGCTACTTTACTAAGGGAGATACACCAAGTGCTACATTCTGGAGTGCCAATCCAAGATATGACCTTCTGACAGAAGGCACATTTGCTGCAGTGGAGAGGCTTCAAGGGGAAAGATGGATTTCTGTATATGATGATGATGATTTAAGCTTGTTTTTCAAGTGGAAAGTAGATAATAGTTCCTTGCATGGGTTAGCTACCATAGAATGGGAAATACCAAATGATGCTGTTTCTGGAGTATACAGATTAAAACACTTTGGAGCAACTAGGACCACCATTATCTCCCCTATTAATTACTTTACTGGTGCTTCAAGTGCATTTGCAGTGCAATAG
>Glyma13g03750.1 sequence type=predicted peptide gene model=Glyma13g03750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAQNYVIVALGLVVYAWTWMQGAHGEYLIGVGSYDMTGPAADVNMMGYANPLQNTAGIHFRLRARTFIVAESLQGPRFVFVNLDAGMASQLLTIKVLERLNSRFGNLYTEENVAISGTHTHAGPGGYLQYVVYSVTSLGFVKQSFDAIANAIEQSIIQAHNNLKPGSIFMNTGDVKDAGINRSPSAYLQNPADERARYPTNVDTQMTLMRFVDGASGKNIGAFSWFPTHGTSMSNQNKLISGDNKDIGQLMKKAQSIKATRGKDCKKLASQASKVRKNDGSLFVGAFCQSNVGDVSPNVLGAFCIDSGKPCDFNRSSCHGNDQLCVGRGPGYPDEILSTKIIGERQFKTAVKLFESTSEELSGKIDYRHVYLNFTDIEVELDSNKVVKTCPAALGPGFAAGTTDGPGLFGFQQGDTKINPFWKNVRDFLTKPSQYQVDCQNPKPVLLSTGEMFYPYPWAPAILPIQILRLGKLIILSVPGELTTMAGRRLREAVKETLISSSNGEFDDETHVVIAGLTNTYSQYIATFEEYQQQRYEAASTLYGPHTLSAYIQEFKKLAQAMAEGENITIKGPSPPDLSSVQISFLLDPLGESPPKGVKFGDIKEDVAFPKRGYFTKGDTPSATFWSANPRYDLLTEGTFAAVERLQGERWISVYDDDDLSLFFKWKVDNSSLHGLATIEWEIPNDAVSGVYRLKHFGATRTTIISPINYFTGASSAFAVQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
