SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G01680 | AT | Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR021640); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01670.1); Has 122 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:252033-255246 FORWARD LENGTH=740 | SoyBase | E_val: 1.00E-43 | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0043621 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein self-association | SoyBase | N/A | ISS |
| UniRef100_E2FKI4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Sieve element occlusion l n=1 Tax=Glycine max RepID=E2FKI4_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LW95 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LW95_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma13g03620 not represented in the dataset |
Glyma13g03620 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
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| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g03620.2 sequence type=CDS gene model=Glyma13g03620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATATGCACAGCTCGTGGCGAGCAATACGCGCATCAAACAACAATGTTGATACTTGAACAGCTGAGAGACTATTCCTGGGATGCAAAAGCAGTGATAGTACTAGGAGCTTTTGCTCTGGAATATGGCAAGTTTTGGCAACTTGCCCATATCCCACGTGACATTAAACTTGGAAAATCATTGGCAGAGTTGAACGGACTTCAAAGCATCATGGGAAACGTACAGCACCTAGCTAACTTCAACAGTTTGGTGCAGAAGATCGAGCAAGTGGTTAAATGCATCACTGATTGGAAGAAGATGATTACTGTGGAGTATAACGTAAAGGATGTGCCTTCTTTGACGGACACTTTGCACTTGATTCCTGTTCTTGCATACTGGACAATCAGCACCTCTTGGTCACTTGTACCTGCCACATTGATTTCCAGGTTGCAATTGCTTGGATTCAGGGGTTACAGATACGACTTATCCAAATTTGACTATAGGCTTGATTTCATTCTCAAAAATTTCAAGGACCATCAAGACAAGTGCAGCACACAGATAGGGCGAATAGAAGATTACTCAAGGCGCAAGGATATTATCACTTCCATTCAAACTGATACACAAATTTATATTGTAAAGTTTTTGGAAGCTCTTGTTAGAAAAATAACATATCCATTGTTGATTATTATCTCCTTGACTCTTTTACAGGCTGCATTAGGAGAGTTTAAGAATAAGCATGTCTTACTGTTCATTTCGGGCCTTGACCACATTGACAATGAGATTCAGCTTTTAAAATCGATCCATGTGAAATTGAAAGAGGAACCAAAGGAGCTAGAGAGTTACAGGAAAGAGGATTTCAAGATTTTATGGATCCCCATAGTAGGAGTTTGGGATGAAGAACAAAAGAAAAAGTTAGATGTTACTAAGGTTGAGTGGTATGTGGTGAAGGAATTCAATTACCAAACAGGTAACCCCATTATCATGCTCATAAGCCCTGAGGGTAAAGTGGAAAACTCTGATGCAAAGCAGATTATTTCCAAATGGGATATTGATGGCTTCCCTTTCAGAACCTCTGATCAAACCAGACTCACTCAGCAATGGAACTGGTTTTGGAATGAAATGATCACCCTCAGTCCAATAATAAGAGAATTGATCAAAAGGGACTCTTACATCTTCATCTATGGAGGCACCAACACTAAGTGGATCCAAGATTTCACCACAGCTGTGGAGAAATTGGAAAAGAATGAAACTCTGACCCAAGAGGAAGAAACCACAATTGAGTCCTATTCATTGGGAAGGGACAACCCCAAGATTGTTCCACGCTTCAGGATCGCCATAGACAACTTGCTTGCTAGCAGGAAACTAACAAAAAGGGGTGGTGAACAAGTGCAAGATTCTACAACAAGAGAGATTCAGAAATTGATGTTCCTCAAACAAGATCCACTTGGATGGGCCATTCTTACAAAAGGGTCTCATGTGAAGCTTCTAGGTCATGGTGATGCTATGCTTAAAACTGTCTCAGACTTTTATGCTTGGAAAGGGACATTGAACAATGAAGTGGGCTTTGATGTAGCTTTCAAGGACTACTATGAGAAGTTTAAGTTTAAAAGTGTTCCTCACAAATGTGAACATAGGGAATTTGCTAACTACCCCGCTGACATTCTAGCTCACATACCATGTCCAAATAAGTGTGGACATGAAATGGAAGTTTCTTCTGTTAAATACATGTGTTGCCTTGGTCGTGAAACCAACCCTTCTTCAAAACACAGGGAACCTTCTCCACCAAGTCCTTGGCTTCCTTCAACCCCAAATCGGTGA
>Glyma13g03620.2 sequence type=predicted peptide gene model=Glyma13g03620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MICTARGEQYAHQTTMLILEQLRDYSWDAKAVIVLGAFALEYGKFWQLAHIPRDIKLGKSLAELNGLQSIMGNVQHLANFNSLVQKIEQVVKCITDWKKMITVEYNVKDVPSLTDTLHLIPVLAYWTISTSWSLVPATLISRLQLLGFRGYRYDLSKFDYRLDFILKNFKDHQDKCSTQIGRIEDYSRRKDIITSIQTDTQIYIVKFLEALVRKITYPLLIIISLTLLQAALGEFKNKHVLLFISGLDHIDNEIQLLKSIHVKLKEEPKELESYRKEDFKILWIPIVGVWDEEQKKKLDVTKVEWYVVKEFNYQTGNPIIMLISPEGKVENSDAKQIISKWDIDGFPFRTSDQTRLTQQWNWFWNEMITLSPIIRELIKRDSYIFIYGGTNTKWIQDFTTAVEKLEKNETLTQEEETTIESYSLGRDNPKIVPRFRIAIDNLLASRKLTKRGGEQVQDSTTREIQKLMFLKQDPLGWAILTKGSHVKLLGHGDAMLKTVSDFYAWKGTLNNEVGFDVAFKDYYEKFKFKSVPHKCEHREFANYPADILAHIPCPNKCGHEMEVSSVKYMCCLGRETNPSSKHREPSPPSPWLPSTPNR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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