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Report for Sequence Feature Glyma13g03620

Feature Type:gene_model
Chromosome:Gm13
Start:3644103
stop:3648865
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G01680AT Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR021640); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01670.1); Has 122 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:252033-255246 FORWARD LENGTH=740 SoyBaseE_val: 1.00E-43ISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0043621GO-mf Annotation by Michelle Graham. GO Molecular Function: protein self-association SoyBaseN/AISS
UniRef100_E2FKI4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Sieve element occlusion l n=1 Tax=Glycine max RepID=E2FKI4_SOYBN SoyBaseE_val: 0ISS
UniRef100_I1LW95UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LW95_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma13g03620.2   sequence type=CDS   gene model=Glyma13g03620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATATGCACAGCTCGTGGCGAGCAATACGCGCATCAAACAACAATGTTGATACTTGAACAGCTGAGAGACTATTCCTGGGATGCAAAAGCAGTGATAGTACTAGGAGCTTTTGCTCTGGAATATGGCAAGTTTTGGCAACTTGCCCATATCCCACGTGACATTAAACTTGGAAAATCATTGGCAGAGTTGAACGGACTTCAAAGCATCATGGGAAACGTACAGCACCTAGCTAACTTCAACAGTTTGGTGCAGAAGATCGAGCAAGTGGTTAAATGCATCACTGATTGGAAGAAGATGATTACTGTGGAGTATAACGTAAAGGATGTGCCTTCTTTGACGGACACTTTGCACTTGATTCCTGTTCTTGCATACTGGACAATCAGCACCTCTTGGTCACTTGTACCTGCCACATTGATTTCCAGGTTGCAATTGCTTGGATTCAGGGGTTACAGATACGACTTATCCAAATTTGACTATAGGCTTGATTTCATTCTCAAAAATTTCAAGGACCATCAAGACAAGTGCAGCACACAGATAGGGCGAATAGAAGATTACTCAAGGCGCAAGGATATTATCACTTCCATTCAAACTGATACACAAATTTATATTGTAAAGTTTTTGGAAGCTCTTGTTAGAAAAATAACATATCCATTGTTGATTATTATCTCCTTGACTCTTTTACAGGCTGCATTAGGAGAGTTTAAGAATAAGCATGTCTTACTGTTCATTTCGGGCCTTGACCACATTGACAATGAGATTCAGCTTTTAAAATCGATCCATGTGAAATTGAAAGAGGAACCAAAGGAGCTAGAGAGTTACAGGAAAGAGGATTTCAAGATTTTATGGATCCCCATAGTAGGAGTTTGGGATGAAGAACAAAAGAAAAAGTTAGATGTTACTAAGGTTGAGTGGTATGTGGTGAAGGAATTCAATTACCAAACAGGTAACCCCATTATCATGCTCATAAGCCCTGAGGGTAAAGTGGAAAACTCTGATGCAAAGCAGATTATTTCCAAATGGGATATTGATGGCTTCCCTTTCAGAACCTCTGATCAAACCAGACTCACTCAGCAATGGAACTGGTTTTGGAATGAAATGATCACCCTCAGTCCAATAATAAGAGAATTGATCAAAAGGGACTCTTACATCTTCATCTATGGAGGCACCAACACTAAGTGGATCCAAGATTTCACCACAGCTGTGGAGAAATTGGAAAAGAATGAAACTCTGACCCAAGAGGAAGAAACCACAATTGAGTCCTATTCATTGGGAAGGGACAACCCCAAGATTGTTCCACGCTTCAGGATCGCCATAGACAACTTGCTTGCTAGCAGGAAACTAACAAAAAGGGGTGGTGAACAAGTGCAAGATTCTACAACAAGAGAGATTCAGAAATTGATGTTCCTCAAACAAGATCCACTTGGATGGGCCATTCTTACAAAAGGGTCTCATGTGAAGCTTCTAGGTCATGGTGATGCTATGCTTAAAACTGTCTCAGACTTTTATGCTTGGAAAGGGACATTGAACAATGAAGTGGGCTTTGATGTAGCTTTCAAGGACTACTATGAGAAGTTTAAGTTTAAAAGTGTTCCTCACAAATGTGAACATAGGGAATTTGCTAACTACCCCGCTGACATTCTAGCTCACATACCATGTCCAAATAAGTGTGGACATGAAATGGAAGTTTCTTCTGTTAAATACATGTGTTGCCTTGGTCGTGAAACCAACCCTTCTTCAAAACACAGGGAACCTTCTCCACCAAGTCCTTGGCTTCCTTCAACCCCAAATCGGTGA

>Glyma13g03620.2   sequence type=predicted peptide   gene model=Glyma13g03620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MICTARGEQYAHQTTMLILEQLRDYSWDAKAVIVLGAFALEYGKFWQLAHIPRDIKLGKSLAELNGLQSIMGNVQHLANFNSLVQKIEQVVKCITDWKKMITVEYNVKDVPSLTDTLHLIPVLAYWTISTSWSLVPATLISRLQLLGFRGYRYDLSKFDYRLDFILKNFKDHQDKCSTQIGRIEDYSRRKDIITSIQTDTQIYIVKFLEALVRKITYPLLIIISLTLLQAALGEFKNKHVLLFISGLDHIDNEIQLLKSIHVKLKEEPKELESYRKEDFKILWIPIVGVWDEEQKKKLDVTKVEWYVVKEFNYQTGNPIIMLISPEGKVENSDAKQIISKWDIDGFPFRTSDQTRLTQQWNWFWNEMITLSPIIRELIKRDSYIFIYGGTNTKWIQDFTTAVEKLEKNETLTQEEETTIESYSLGRDNPKIVPRFRIAIDNLLASRKLTKRGGEQVQDSTTREIQKLMFLKQDPLGWAILTKGSHVKLLGHGDAMLKTVSDFYAWKGTLNNEVGFDVAFKDYYEKFKFKSVPHKCEHREFANYPADILAHIPCPNKCGHEMEVSSVKYMCCLGRETNPSSKHREPSPPSPWLPSTPNR*







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