SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G21750 | AT | Annotation by Michelle Graham. TAIR10: PDI-like 1-1 | chr1:7645767-7648514 FORWARD LENGTH=501 | SoyBase | E_val: 0 | ISS |
| GO:0006662 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glycerol ether metabolic process | SoyBase | N/A | ISS |
| GO:0009627 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0009790 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development | SoyBase | N/A | ISS |
| GO:0010043 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to zinc ion | SoyBase | N/A | ISS |
| GO:0034976 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress | SoyBase | N/A | ISS |
| GO:0043067 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of programmed cell death | SoyBase | N/A | ISS |
| GO:0045454 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell redox homeostasis | SoyBase | N/A | ISS |
| GO:0048316 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed development | SoyBase | N/A | ISS |
| GO:0000326 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: protein storage vacuole | SoyBase | N/A | ISS |
| GO:0000327 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: lytic vacuole within protein storage vacuole | SoyBase | N/A | ISS |
| GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0009505 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009579 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: thylakoid | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0003756 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein disulfide isomerase activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0009055 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: electron carrier activity | SoyBase | N/A | ISS |
| GO:0015035 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein disulfide oxidoreductase activity | SoyBase | N/A | ISS |
| GO:0016853 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: isomerase activity | SoyBase | N/A | ISS |
| KOG0190 | KOG | Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) | JGI | ISS | |
| PTHR18929 | Panther | PROTEIN DISULFIDE ISOMERASE | JGI | ISS | |
| PTHR18929:SF32 | Panther | PROTEIN DISULFIDE ISOMERASE | JGI | ISS | |
| PF00085 | PFAM | Thioredoxin | JGI | ISS | |
| UniRef100_I1LW93 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LW93_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_I7FST9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein disulfide isomerase-like protein n=1 Tax=Glycine max RepID=I7FST9_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma13g03600 not represented in the dataset |
Glyma13g03600 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma14g24090 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g077300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g03600.2 sequence type=CDS gene model=Glyma13g03600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGCATCATAACAATATTAGGGTTTCGATTTGCTTCCTCTTCGCGTCATCCCTTCTTTCTCTCTTCGCTCAGATCTCCTCCGGGAAGGAGTTCGTTCTCACTTTGAATCGCTCCAACTTCTCCGACATTGTCACCAAACACAACTTCGTCGTCGTCGAGTTCTACGCGCCTTGGTGTGGCCACTGTATGAAGCTTGCTCCAGAGTATGAGAAAGCAGCCTCTATCTTGAGTAGCAATGATCCTCCAGTTATTTTGGCTAAAGTTGATGCGAATGAGGAAAAGAACAGAGAACTTGCAAGCCAATTTCAGGTTCAGGGATTTCCAACTATTAAGATTCTGAGAAATGGGGGCAAGGTTGTTCAAGATTACAAAGGTCCCCGTGAAGCAGATGGTATTGTTGACTATTTGAAGAAGCAAAGTGGTCCTGCAACAACTGAAATTAAATCTGCAGATGATGCTAGTGCTTTGATTGACAAAAATAAAGTTGTTATTGTTGGGGTCTTTCCAAAATTTTCTGGGGAGGAGTATGAGAATTTCAATGCATTGGCAGATAAATTGCGTTCTGAATATGATTTCAGTCACACATTGAATGCCAAACACCTTCCACGTGGAGAATCATCGGTGACTGGGCCTGTAGTTAGATTATTCAAGCCATTTGATGAACTTTTTGTTGACTTCTATGATTTTAATATGGAAGCCTTATCGAAATTTGTTGAAGAATCTAGTGTCCCTATTGTGACTGTCTTTAACAATGACCCAAGCAATCACCCTTTTGTTGTCAAATTCTTTGACAATCCAAATGTAAAGGCAATGATGTTCTTCAACTTCACTGTTGACAATGCGGATTCTCTCAAATCAAAATTCCGTGAATCTGCCGAGCAATATAGACAACAGGGCATAAGCTTTCTAGTGGGAGACCTTGAGGCTAGTCAAGGTGCATTCCAGTATTTTGGCCTTAAGGAAAACCAAGTGCCTCTAATTGTCATTCAACATAATGATGGGAAAAAGTTTTTGAAAACTAATGTGGAACCTGATCACATTGCAACTTGGTTGAAGGCGTACAAGGATGGAAGTGTTGAACCATTCAAGAAGTCTGAACCTATTCCCGAAGTTAACAATGAATCTGTTAAAGTAGTAGTTGCAGACAATCTTCAGGACATTGTTTTCAACTCAGGGAAAAATGTTTTGCTGGAGATTTATGCTCCTTGGTGTAGTCACTGCAAAAAGTTGGCTCCGATATTGGAGGAAGTTGCTGTTTCATATCAAAGTAATCCTGATGTTATTATTGCAAAACTGGATGCAACTGCCAACGATATACCACGTGATACTTTTGATGTACAAGGTTATCCAACAGTGTACTTCAGGTCAGCAAGTGGACAGATATCACAGTATGATGGAAGTAGGAAAAAGGAAGACATCATAGATTTCATTGAAAAGAACCGGGATAAAGTGGATCAGCAAGAATCAGTAAAAGATGAGCTTTGA
>Glyma13g03600.2 sequence type=predicted peptide gene model=Glyma13g03600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAHHNNIRVSICFLFASSLLSLFAQISSGKEFVLTLNRSNFSDIVTKHNFVVVEFYAPWCGHCMKLAPEYEKAASILSSNDPPVILAKVDANEEKNRELASQFQVQGFPTIKILRNGGKVVQDYKGPREADGIVDYLKKQSGPATTEIKSADDASALIDKNKVVIVGVFPKFSGEEYENFNALADKLRSEYDFSHTLNAKHLPRGESSVTGPVVRLFKPFDELFVDFYDFNMEALSKFVEESSVPIVTVFNNDPSNHPFVVKFFDNPNVKAMMFFNFTVDNADSLKSKFRESAEQYRQQGISFLVGDLEASQGAFQYFGLKENQVPLIVIQHNDGKKFLKTNVEPDHIATWLKAYKDGSVEPFKKSEPIPEVNNESVKVVVADNLQDIVFNSGKNVLLEIYAPWCSHCKKLAPILEEVAVSYQSNPDVIIAKLDATANDIPRDTFDVQGYPTVYFRSASGQISQYDGSRKKEDIIDFIEKNRDKVDQQESVKDEL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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