|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT1G34750 | AT | Annotation by Michelle Graham. TAIR10: Protein phosphatase 2C family protein | chr1:12736386-12737727 REVERSE LENGTH=282 | SoyBase | E_val: 2.00E-48 | ISS |
GO:0002237 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to molecule of bacterial origin | SoyBase | N/A | ISS |
GO:0009627 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance | SoyBase | N/A | ISS |
GO:0031347 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of defense response | SoyBase | N/A | ISS |
GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
GO:0004722 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity | SoyBase | N/A | ISS |
PTHR13832 | Panther | PROTEIN PHOSPHATASE 2C | JGI | ISS | |
PTHR13832:SF149 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
PF00481 | PFAM | Protein phosphatase 2C | JGI | ISS | |
UniRef100_A2Q6E4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein phosphatase 2C-like n=2 Tax=Medicago truncatula RepID=A2Q6E4_MEDTR | SoyBase | E_val: 1.00E-47 | ISS |
UniRef100_UPI000233BDD8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233BDD8 related cluster n=1 Tax=unknown RepID=UPI000233BDD8 | SoyBase | E_val: 1.00E-69 | ISS |
Glyma13g03547 not represented in the dataset |
Glyma13g03547 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g03547.1 sequence type=CDS gene model=Glyma13g03547 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTGGTTGGAGGACGTTCTTCATGTAACTCTGGCAAAGGCAATAGCAATCATTCCTCAGTCAAGTATGGTTATAGCCTAGTTAAAGGTAAAGCAAACCACCCGATGGAGGACTATCACGTAGCAAAATTTGTCCAGTTCAAAGGGCGAGAGCTTGGGCTTTTTGCTATATATGATGGACACCTGGGTGACAGTGTACCGGCCTATTTACAAAAGCATATGTTTTCTAACATCTTGAAGGAAGAGGACTTCTGGAATGATCCATTCATGTCCATTTCTAATGCATATGAGACAACAAATCAGGAAATTCTTTCTCACAGGCAGTAA
>Glyma13g03547.1 sequence type=predicted peptide gene model=Glyma13g03547 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high VVGGRSSCNSGKGNSNHSSVKYGYSLVKGKANHPMEDYHVAKFVQFKGRELGLFAIYDGHLGDSVPAYLQKHMFSNILKEEDFWNDPFMSISNAYETTNQEILSHRQ*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||