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Report for Sequence Feature Glyma13g03290

Feature Type:gene_model
Chromosome:Gm13
Start:3245344
stop:3247412
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g03290
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G21830AT Annotation by Michelle Graham. TAIR10: unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF740 (InterPro:IPR008004); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G44608.1); Has 49 Blast hits to 49 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:7661429-7662521 REVERSE LENGTH=206 SoyBaseE_val: 3.00E-28ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF05340PFAM Protein of unknown function (DUF740) JGI ISS
UniRef100_I1LW76UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LW76_SOYBN SoyBaseE_val: 2.00E-166ISS
UniRef100_Q9ST96UniRef Annotation by Michelle Graham. Most informative UniRef hit: CAA30371.1 protein (Fragment) n=1 Tax=Oryza sativa RepID=Q9ST96_ORYSA SoyBaseE_val: 5.00E-22ISS

Expression Patterns of Glyma13g03290
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g03290 not represented in the dataset
Glyma13g03290 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g03290
ParalogEvidenceComments
Glyma14g23728 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g03290 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g079800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g03290
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g03290
>Glyma13g03290.1   sequence type=CDS   gene model=Glyma13g03290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATAGAAATGCACACAATAAGGAGGAAAAAGGTTGCTGCTATTTCCACCCAAAACAAGTGGTTGTTGGAGTGTGCCCCTTGTGCTTGAATGAGAGGCTCCTCATACTTGCTGCAAAACAAGACCATCATAATCATCATCACAGGCTTCAAAGTTCCACTCAGAGGAAGGCTTCAGCTTCTATTCACAAGATCTTTGCTTTTGGTTCTCTTTTCACTCGCCACCAATTGAAATCGCACAACTATTATGATCAAGATGATGCCTCTCCCAGCCCAGAAGGAAAGACCTTATTTTACTCATTAATGCCTGCTTTTTCTATTGTCAAATTTTCTTATCCTTACTCATTCATCTCAATGAAATTTGAAGAAAATGGAGTAGCCTCATGGGAGAAGAGCACCAGCACCAATGCCATCTCAAATATCTCCAACAAGAAGGTGTGTGTAGAGAGGCAGGTCCTAGACAAGGACGCCAAGGAGAGCAAGAGCGTGGTAGAGCATGGCAAGTCAAATAACGCGTTTAGATGGCGAAAGCGTATTGGCCGTTTGGTCCACTTTATCCCATGGAAGAGGTCTAATAAGGGTGGGGGTGTGGGTCACGTTGAAGGAGTGAAGGTTAATAGAAAGGGTTGGATGAGAACGCTGACAAAGAGGAAGACCGTGGAACAAAAGGGTTAA
Predicted protein sequences of Glyma13g03290
>Glyma13g03290.1   sequence type=predicted peptide   gene model=Glyma13g03290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNRNAHNKEEKGCCYFHPKQVVVGVCPLCLNERLLILAAKQDHHNHHHRLQSSTQRKASASIHKIFAFGSLFTRHQLKSHNYYDQDDASPSPEGKTLFYSLMPAFSIVKFSYPYSFISMKFEENGVASWEKSTSTNAISNISNKKVCVERQVLDKDAKESKSVVEHGKSNNAFRWRKRIGRLVHFIPWKRSNKGGGVGHVEGVKVNRKGWMRTLTKRKTVEQKG*






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