SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G44820 | AT | Annotation by Michelle Graham. TAIR10: Peptidase M20/M25/M40 family protein | chr1:16926351-16928354 FORWARD LENGTH=438 | SoyBase | E_val: 0 | ISS |
| GO:0006520 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular amino acid metabolic process | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0004046 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: aminoacylase activity | SoyBase | N/A | ISS |
| GO:0016787 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity | SoyBase | N/A | ISS |
| KOG2275 | KOG | Aminoacylase ACY1 and related metalloexopeptidases | JGI | ISS | |
| PTHR11014 | Panther | PROTEASE M20-RELATED | JGI | ISS | |
| PTHR11014:SF16 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF01546 | PFAM | Peptidase family M20/M25/M40 | JGI | ISS | |
| PF07687 | PFAM | Peptidase dimerisation domain | JGI | ISS | |
| UniRef100_I1LW56 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1LW56_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9LPE9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Aminoacylase n=2 Tax=Arabidopsis thaliana RepID=Q9LPE9_ARATH | SoyBase | E_val: 0 | ISS |
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Glyma13g02870 not represented in the dataset |
Glyma13g02870 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g081500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g02870.1 sequence type=CDS gene model=Glyma13g02870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCACTCCACAGTCCCACTTCCGTTTTCTCGCTTTCTCACTCTCTATCATCCATATCTCTCTCTTCCTCTCCACAACCGCAACCCAACAACCGCTCCTCGAAGAACAAGACACTCCCATCACGCACTTCCAGCGCTACCTCCGCATTAACACAGCCCACCCAACGCCTGACTACACCTCCGCGGTCTCCTTCCTCAAAGCCCAGGCCCAAAGCCTGGGCCTCAAAACCCAAACCCTCGAGTTCGTCCAAGGCAAGCCCGTCCTCCTCCTCACGTGGCCGGGCTCAAACCCCTCCCTCCCCTCCCTCCTTCTCAACTCCCACCTCGACTCCGTCCCCGCCGAGCCCGAGAAATGGCTCCACAATCCCTTCTCCGCCCACCGCACCGCCTCCGGCGCCATCTTCGCCCGCGGCGCCCAGGACGACAAATGTATCGCTATTCAGTACCTGGAAGCCATCCGCAACCTCAAATCCCAATCCTTCACTCCACACCGCACAATCCACATCTCCCTCGTCCCCGACGAGGAAATCGGCGGCATCGACGGGGCCGCCAAGTTCGTGGAGTCCGAGGAATTCAACGGACTCAACGTTGGATTCGCGCTCGACGAGGGGCAGGCCTCGCCGGGCGATGAATTTAGGGTTTTCTACTCCGATAGGGTTCCGTGGAACGTGAAGATTAGGGCTAAGGGGAGGCCCGGGCATGGGTCGAGGATGTATGATGGGAGTGCGGTGGAGAATTTGATGGAGAGCGTGGAGGTAGTGAGTAGGTTCAGGGAGAGCCAGTTTGATGTGGTGAAGGCCGGGAAAGCTTTGAATGGTGAGGTTGTGTCGGTGAATCCGGTTTATGTCAAGGCTGGGGTTGTTTCTGAAGATGGGTTTGCAATGAACGTCCAGCCTTCGGAGGCGGAAGCTGGGTTCGATCTGAGGCTGACACCAACAACAGACCCAGAGGAAATGAGAAGGCGAATTGCAGAGGAATGGGCGCCGGCTGTTAGGAATATGTCATACGAGATTATAGAGAAAGGACCTCTTAGAGACTACATGGGACGTCCGTTAATGACTGCAACCGATGATTCCAATCCATGGTGGTCAGTTTTCAAGCAAGCTATCACATCTGTTGGAGAAAAGCTTTCAAGGCCTGAAATTCTTGCATCCACAACTGATGCTCGATACCTCAGACAGAAAGGAATTCCTGTGCTCGGTTTCTCCCCAATGAAAAATACTCCCATCTTGCTTCATGACCACAATGAGCACTTAAAGGATACTGTGTTCATGAAGGGAATTCAGGTATACGAGTCTCTGATAAGTTCCTTGAGTACATTTACAGAAGCTTCACATTAA
>Glyma13g02870.1 sequence type=predicted peptide gene model=Glyma13g02870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MATPQSHFRFLAFSLSIIHISLFLSTTATQQPLLEEQDTPITHFQRYLRINTAHPTPDYTSAVSFLKAQAQSLGLKTQTLEFVQGKPVLLLTWPGSNPSLPSLLLNSHLDSVPAEPEKWLHNPFSAHRTASGAIFARGAQDDKCIAIQYLEAIRNLKSQSFTPHRTIHISLVPDEEIGGIDGAAKFVESEEFNGLNVGFALDEGQASPGDEFRVFYSDRVPWNVKIRAKGRPGHGSRMYDGSAVENLMESVEVVSRFRESQFDVVKAGKALNGEVVSVNPVYVKAGVVSEDGFAMNVQPSEAEAGFDLRLTPTTDPEEMRRRIAEEWAPAVRNMSYEIIEKGPLRDYMGRPLMTATDDSNPWWSVFKQAITSVGEKLSRPEILASTTDARYLRQKGIPVLGFSPMKNTPILLHDHNEHLKDTVFMKGIQVYESLISSLSTFTEASH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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