Glyma13g02780 - SoyBase

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Report for Sequence Feature Glyma13g02780

Feature Type:	gene_model
Chromosome:	Gm13
Start:	2751228
stop:	2754915
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g02780

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G21930	AT	Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G42150.3); Has 43 Blast hits to 43 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr1:7713466-7714298 FORWARD LENGTH=98	SoyBase	E_val: 3.00E-45	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1LW52	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LW52_SOYBN	SoyBase	E_val: 1.00E-61	ISS
UniRef100_Q2QQW1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=2 Tax=Oryza sativa RepID=Q2QQW1_ORYSJ	SoyBase	E_val: 8.00E-43	ISS

Expression Patterns of Glyma13g02780

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g02780

Paralog	Evidence	Comments
Glyma14g33150	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g02780 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g081900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g02780

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g02780

Limit To All Plant Sequences

>Glyma13g02780.2   sequence type=transcript   gene model=Glyma13g02780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACCGGAATTGTTTTTTCTATCCTCGTTAAAAGACACATCTTCTCAGACTGAAAATGGGAGGTGAAGAAAATGTAAAGCATCTCGAAGACTGCTCTGTTTCCAATGCGCTAGGCACTTGGGTATTCTCAGTTGCAGGAGCTTTGCTGGCTATTCCAGTGGGGATAAAGCGCAAATCTCTGGCACCCCTTGTATTTTTTGGCACCACTGGTACTATGTTGGATATTATTATGGGAATTAGTGCTTGCGAAAGGGAACATGCAGAGCGCCAAATGAAGCTACTTGAAGCACAAAATGCTGCTGCTGAGACTCCTTTGGGTGAAACTGAAATTGATTCATAAACTGCCATCATTAAGTTGTCAGCATTGTCAAATTTTGTTTGGTCATGATTGTAACAAACTGAATGCACTTTTTATGGTAACCCAAGGTCAGATGTTCTTCTAATTGTTGCTTTTTCATTGGCCTTTTTCTGGTTTTTCTTCCAGCAGGGTCGAACAAAGAAGGTGGATATGCAGGATTTCTTTGTTATAATTTATTACTATAAGGATTGCAGGGATGTTTGGTACATTATGTTTCCAATATAATGGTAATTGAAAAACGCCCTTGTTGGGATATAGCTACAACACCCAAAAGGATTCTTATTTTTGGAGCAAATTGTATATCGAATAATTGGAGCAGTGTACCCAATTTTATAGGGCAGCTGATCTCTTGTTTTTTTATCTAATCACATTTTTACCTTGCTCATGAGGCACTATCTCAA

Coding sequences of Glyma13g02780

Limit To All Plant Sequences

>Glyma13g02780.1   sequence type=CDS   gene model=Glyma13g02780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGGTGAAGAAAATGTAAAGCATCTCGAAGACTGCTCTGTTTCCAATGCGCTAGGCACTTGGGTATTCTCAGTTGCAGGAGCTTTGCTGGCTATTCCAGTGGGGATAAAGCGCAAATCTCTGGCACCCCTTGTATTTTTTGGCACCACTGGTACTATGTTGGATATTATTATGGGAATTAGTGCTTGCGAAAGGGAACATGCAGAGCGCCAAATGAAGCTACTTGAAGCACAAAATGCTGCTGCTGAGACTCCTTTGGGTGAAACTGAAATTGATTCATAA

>Glyma13g02780.2   sequence type=CDS   gene model=Glyma13g02780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGGTGAAGAAAATGTAAAGCATCTCGAAGACTGCTCTGTTTCCAATGCGCTAGGCACTTGGGTATTCTCAGTTGCAGGAGCTTTGCTGGCTATTCCAGTGGGGATAAAGCGCAAATCTCTGGCACCCCTTGTATTTTTTGGCACCACTGGTACTATGTTGGATATTATTATGGGAATTAGTGCTTGCGAAAGGGAACATGCAGAGCGCCAAATGAAGCTACTTGAAGCACAAAATGCTGCTGCTGAGACTCCTTTGGGTGAAACTGAAATTGATTCATAA

Predicted protein sequences of Glyma13g02780

Limit To All Plant Sequences

>Glyma13g02780.1   sequence type=predicted peptide   gene model=Glyma13g02780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGEENVKHLEDCSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREHAERQMKLLEAQNAAAETPLGETEIDS*

>Glyma13g02780.2   sequence type=predicted peptide   gene model=Glyma13g02780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGEENVKHLEDCSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREHAERQMKLLEAQNAAAETPLGETEIDS*

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