Glyma13g02760 - SoyBase

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Report for Sequence Feature Glyma13g02760

Feature Type:	gene_model
Chromosome:	Gm13
Start:	2726153
stop:	2732959
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g02760

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G77680	AT	Annotation by Michelle Graham. TAIR10: Ribonuclease II/R family protein \| chr1:29192188-29195963 REVERSE LENGTH=1055	SoyBase	E_val: 0	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
GO:0004540	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ribonuclease activity	SoyBase	N/A	ISS
KOG2102	KOG	Exosomal 3'-5' exoribonuclease complex, subunit Rrp44/Dis3	JGI		ISS
PTHR23355	Panther	RIBONUCLEASE	JGI		ISS
PTHR23355:SF10	Panther	RIBONUCLEASE II-RELATED	JGI		ISS
PF00773	PFAM	RNB domain	JGI		ISS
UniRef100_G7K8W4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DIS3-like exonuclease n=1 Tax=Medicago truncatula RepID=G7K8W4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233BC62	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233BC62 related cluster n=1 Tax=unknown RepID=UPI000233BC62	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g02760

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g02760

Paralog	Evidence	Comments
Glyma14g33170	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g02760 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g082100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g02760

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g02760

Limit To All Plant Sequences

>Glyma13g02760.2   sequence type=CDS   gene model=Glyma13g02760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGACCCGCGGTTGAAGGATCCATGGCCGAGAGGTTTGACGACGGCGAAAAGGAGAAGAAGAAGAAGAAGCGCCGATCCAATCGACGATCCAAGCAAAACCCTCCCTCATCTTCAGCATCTGAAGTGAATGAGGCCCAGGGGTTGTCACCAGATTCAGGGAAAATTGGAACACCTACTCATGCTTCTCCATCCTTGGGCAATTCATTGAACCAGGTCAATGTGTGTTCTTCTAATGAGCAAGGATTATCCAAAGCATCAAATGTTGCTTTTATTTCGATACCTCCCATGCATATCAATGAGCAAGTGGAACCTGGTGATTTGCGAATTTTGCCAATGTGTGGTGGAGGTATTGATTCAAATTCATTTTCTGAGCCCACTGGTTGCAGAGGGTCATCTGGAATTAATAAAAACAAGGACTCAGTACCTTGTGGTCAAATTGGGCTTTGTGGCCAGGAAAAATATTTTAGTCCACACTGGTCTGTAGAGGCTGTTGAGAAGGAATTAGAGGAGGGTGATGTTTTTAAAGCTCTCTTTCATGTCAATGCTCACAATAGACTCGAGGCATACTGCAAAATTGATGGAATGCCAACTGATGTTTTCATTGGTGGGATTCCAGCCCAGAATAGAGCTGTGGAAGGTGATGTCGTTGCAGTCAAGTTTGATCCCTTGCCATTGTGGACAAAAATGAAAGGACCAAACGGGTCTTGTAACAACACTGCAACACCAGAAGGTTGCAACCTTACAGAAGATAAAGAAGTGGGCGGTAATATTTGTAAAGGGAAAGCTAAAGTAGATGCTGAGTATGAGTCTGCTCATGGCAGAAGCTATCCTGGTCAAAACAAGGAGGATGCTGATCAAAACTCCTTGTATAAAAGTTATCCTTTTACTGAAACAACAATGGTCTATGATGATATTACCTCCCGGGGTTCTACTAATCATTTAGATCTACATGGAATGGCCAACCATGACAGCATTAATGGTCATCACTGTGCTGCTCCTAATTCCTTAAAGATCAATTCTTGTAGTGGGCAGAGCAATGCAGTGGAAAAGATGTGTTTGTTGGTTAACTCTTTCCCTTCTAAAAGACCAACTGGCAGGGTGGTTGCTATTATTGAGAGATCTCCACGTCGAGAGGGTATTGTTGGTCACATTAATGTGAAGCAGTGGGTTTCTTTCAGGGACACAAGCAAAAAGGATGTGAAGAAGAATAAGAATTTGATTTCTGAGCATGAATACATCCAACTGATACCAACTGATCCAAAGTTTCCAAATATGATGCTTCTTGTTAGAAAGTTACCAAAGTGCATTAAGAAAAGAATGAAAAGTGGTGATGTGACAATCCAAATGGATCTGGTAGCTGTACAAATTGATGATTGGGTTGAAGAAAGTCCTTTTCCCGAGGCTCACATTTTGCGTGTTTTTGGACAAGGTGGTGAAGTTCAGACCCAGTTAGATGCAATTTTGTTTCAGAATGCTATCTGTTTGTCTGAATTTTCACCTGAAGCTCTGTCCTGTCTGCCATGTGTTCCTTGGGAGATTCCACTGAAGGAAATTCAAAGTAGAATAGATCTGAGAAATTTGTGCATATTTACTATCGATCCTTCGACTGCCACTGATCTGGATGATGCACTGTCAATTGAGAAGTTGCCTAATGGAAATTATAGAGTAGGTGTCCACATTGCTGATGTATCATATTTTGTTTTACCTGACACAGCCTTGGATAATGAGGCTAAGTTTAGGTCAACAAGTGTCTATATGTTGCAAAGAAAGTTACCTATGCTGCCTGCATTATTGTCAGAGAATATCGGTTCACTTAGTCCTGGAGTGGATCGGCTTGCAGTATCCATGCTCCTGGATATAAATGTTGCAGGAGATGTTGTAGACCGTTGGATTGGTCGTACTGTCATACAGTCTTGTTGTAAGCTTTCATATGAACATGCTCAGGACATCATTGACAAGGCTTTTGATTTTGAGGGTTCAAATTTCATTGAAGATGGCTATCCTAGAGTGTATGGCCATTTTGAATGGCCTGATGTTATTATGTCTTTGGAGAGTCTTTATGAAATTTCAAATGTCTTGAAACAGAAGAGGTTTACTGATGGGGCTCTACGGCTTGAAAACCCCAAAGTTGTTATCTTGTTTGATGAAAATGGAGTTCCTTACGATAGTAGGCTTTCTGAAAGGAAAGAATCAAATTTTCTTGTTGAGGAATATATGCTTTTGGCCAATAGAATTGCAGCTGAAGTCATATGTAGAGCTTATCCTGATGGTGCATTGTTGAGGAGGCATCCTGAACCTAATATGCGGAAGCTGAGAGAGTTCATGGCATTTTGTCAGAAACATGGTTTAGAATTGAACACGTCTTCATCTGGTGAGTTACATTGGTCGTTAGAGCAGATCAGGGAAAAGCTTAAGGGTGATCCTGTGCTTTACAATATACTTATTTCTTATGCTACAAGGCCAATGCAGTTGGCATCTTACTTCTGTAGTGGAGATTTAAAGGACAGTGAAAATGAATGGGGTCATTATGCTTTGGCCGTCCCATTTTACACTCATTTCACATCACCTCTGCGTCGGTATCCAGATATTATTGTTCACCGGACACTACTTGCTACTATAGAGGCTGAGGAGTTGTATATGAAGCATCAGAAGGCTTTGCAGGGTTCCAAGGAAGTAAAAGTGCAAAAAAGATGTTTCACAGGCATTAATTTTGATAAAAGTGCTGCAGAATCCACGGAAGGTAGGGAAGCACTGTCAGCTGCAGCTGTGAAGCATAGTGTTCCATGTGCCGAAACACTTGCAGATATTGCTACTTATTGCAATGGGAGAAAGCTAGCTAGTAGAAACGTTAAGGATGCCTGTGATAAACTTTACATATGGTTTCTCCTGAAGAAAAAGGAGGTTTTATTGTCAGAAGCAAGAATACTGGGACTAGGCCCAAGATTCATGTCAATTTATATTCAAAAGCTAGCTATTGAGCGACGCATATATTATGATGAAGTTCAAGGTTTGACTGTGGAGTGGCTTGAGACAACATCCACTTTGGTGCTTAGCATGTCTACTAATAAGTGTGCATATAGGAGGGGCTGCCCTAACAAGTTGAGGCCATTTGAAGAAGTTGCATTGCTTACTTGTCCATATAACCTGGATTTTACCACGGATAATTCTAACCCAAGTGAAGTAATGAAAGTGGATGATAGTATATCTGCCATGGACAGGGAGCCCATTTCAAGATCAGACGCATTGGAAACTTTAATTGACCCTGCATTTTTCCCACTCACAGTACGTCTTCTTTCAACAATTCCAGTAGCACTTCATGCTGTTGGTGGTGATGATGGGCCCCTTGATATTGGTGTGAGGCTGTACATGAGCTCCTATATTGGGTGA

Predicted protein sequences of Glyma13g02760

Limit To All Plant Sequences

>Glyma13g02760.2   sequence type=predicted peptide   gene model=Glyma13g02760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRPAVEGSMAERFDDGEKEKKKKKRRSNRRSKQNPPSSSASEVNEAQGLSPDSGKIGTPTHASPSLGNSLNQVNVCSSNEQGLSKASNVAFISIPPMHINEQVEPGDLRILPMCGGGIDSNSFSEPTGCRGSSGINKNKDSVPCGQIGLCGQEKYFSPHWSVEAVEKELEEGDVFKALFHVNAHNRLEAYCKIDGMPTDVFIGGIPAQNRAVEGDVVAVKFDPLPLWTKMKGPNGSCNNTATPEGCNLTEDKEVGGNICKGKAKVDAEYESAHGRSYPGQNKEDADQNSLYKSYPFTETTMVYDDITSRGSTNHLDLHGMANHDSINGHHCAAPNSLKINSCSGQSNAVEKMCLLVNSFPSKRPTGRVVAIIERSPRREGIVGHINVKQWVSFRDTSKKDVKKNKNLISEHEYIQLIPTDPKFPNMMLLVRKLPKCIKKRMKSGDVTIQMDLVAVQIDDWVEESPFPEAHILRVFGQGGEVQTQLDAILFQNAICLSEFSPEALSCLPCVPWEIPLKEIQSRIDLRNLCIFTIDPSTATDLDDALSIEKLPNGNYRVGVHIADVSYFVLPDTALDNEAKFRSTSVYMLQRKLPMLPALLSENIGSLSPGVDRLAVSMLLDINVAGDVVDRWIGRTVIQSCCKLSYEHAQDIIDKAFDFEGSNFIEDGYPRVYGHFEWPDVIMSLESLYEISNVLKQKRFTDGALRLENPKVVILFDENGVPYDSRLSERKESNFLVEEYMLLANRIAAEVICRAYPDGALLRRHPEPNMRKLREFMAFCQKHGLELNTSSSGELHWSLEQIREKLKGDPVLYNILISYATRPMQLASYFCSGDLKDSENEWGHYALAVPFYTHFTSPLRRYPDIIVHRTLLATIEAEELYMKHQKALQGSKEVKVQKRCFTGINFDKSAAESTEGREALSAAAVKHSVPCAETLADIATYCNGRKLASRNVKDACDKLYIWFLLKKKEVLLSEARILGLGPRFMSIYIQKLAIERRIYYDEVQGLTVEWLETTSTLVLSMSTNKCAYRRGCPNKLRPFEEVALLTCPYNLDFTTDNSNPSEVMKVDDSISAMDREPISRSDALETLIDPAFFPLTVRLLSTIPVALHAVGGDDGPLDIGVRLYMSSYIG*

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