SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G37130 | AT | Annotation by Michelle Graham. TAIR10: nitrate reductase 2 | chr1:14158617-14161652 FORWARD LENGTH=917 | SoyBase | E_val: 0 | ISS |
| GO:0006809 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nitric oxide biosynthetic process | SoyBase | N/A | ISS |
| GO:0009416 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to light stimulus | SoyBase | N/A | ISS |
| GO:0009610 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to symbiotic fungus | SoyBase | N/A | ISS |
| GO:0042128 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nitrate assimilation | SoyBase | N/A | ISS |
| GO:0044242 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular lipid catabolic process | SoyBase | N/A | ISS |
| GO:0048767 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root hair elongation | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0005506 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: iron ion binding | SoyBase | N/A | ISS |
| GO:0008940 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nitrate reductase activity | SoyBase | N/A | ISS |
| GO:0009055 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: electron carrier activity | SoyBase | N/A | ISS |
| GO:0009703 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nitrate reductase (NADH) activity | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| GO:0020037 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: heme binding | SoyBase | N/A | ISS |
| GO:0030151 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molybdenum ion binding | SoyBase | N/A | ISS |
| GO:0043546 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molybdopterin cofactor binding | SoyBase | N/A | ISS |
| GO:0046857 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor | SoyBase | N/A | ISS |
| GO:0046872 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: metal ion binding | SoyBase | N/A | ISS |
| GO:0050660 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding | SoyBase | N/A | ISS |
| KOG0534 | KOG | NADH-cytochrome b-5 reductase | JGI | ISS | |
| PTHR19370 | Panther | NADH-CYTOCHROME B5 REDUCTASE | JGI | ISS | |
| PTHR19370:SF5 | Panther | NITRATE REDUCTASE | JGI | ISS | |
| PF00173 | PFAM | Cytochrome b5-like Heme/Steroid binding domain | JGI | ISS | |
| PF00175 | PFAM | Oxidoreductase NAD-binding domain | JGI | ISS | |
| PF00970 | PFAM | Oxidoreductase FAD-binding domain | JGI | ISS | |
| PF03404 | PFAM | Mo-co oxidoreductase dimerisation domain | JGI | ISS | |
| UniRef100_I1MAM4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Nitrate reductase n=1 Tax=Glycine max RepID=I1MAM4_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MAM4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Nitrate reductase n=1 Tax=Glycine max RepID=I1MAM4_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma13g02535 not represented in the dataset |
Glyma13g02535 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g083800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g02535.1 sequence type=CDS gene model=Glyma13g02535 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAGGAGATCTTGCCCATCAACTCATTCACTATGCAGTATCTACTCAAAGGCTACGCATATACTGGTGGTGGAAGAAAACTGACACGTGTGGAAGTAACACTGGACGTTAGAAAAACGTGGCGCGTGTGCAAATTGGACCGTACCGAGAAACCGAACAAATATGGCAAGTACTGTTGCTGGTGTTTCTGGTCTTTGGAGTTGGAGGTGATGAACCTGCTTGGGACCAAGGAGATTGCAGGCTTGATGAACAATTGCTGGTTCAGAGTGAAAACAAATGTAGCAAAGCCCCACAAGGGTGAGATTGGAATAGTGTTTGAACACCCTACCCAACCAGCAAACCAACCCGGTGGTTGGATGGTAAAGGAAAAACATTTGGAGAAATCACTAGAGAAATTACCAACCCTAAGAAAGAGTGGTTCCACACAATCCATGAACACATCCTCAAAAATGTTCACCATCTCTGAAGTCAAAAAACATTGCACCTCTGACTCTACTTGGATCATCATCCATGGCCACGTGTATGACTGCACCCGCTTCCTCAAAGACCACCCTGGCGGTGTCGATAGCATCCTCATAAATGCAGACACCGACTGCACTGAAGAGTTCGATGCCATCCATTCCGACAAAGCAAAGCAAATGCTTCAAGATTTTCGAATTGGCGACCTCATGAGCACATGCAGGAAATTAATCACCACACCACCACCACCACGCGAGAAAATCTCATGCAAACTCGTGTCAAAGACTTCGATTTCCCATGATGACCAACTTCTAGGTTTACCTGTGGGAAAGCACATTTTCCTATGCACCACCATCAATGACAAGCTATGCATGCGAGCCTACACTCCAACAAGTAGTGTGGACGAAGTAGGGTTTTCCGAACTTGTCATCAAGGTTTACTTCAAGGCGTGCACTCCAAGTTCCCAAACGGAGGACTCTTGTCTCAACATTTGGACTCCCTCCCCATTGGGCCACATAGAGTACACCGCAAGAGGCAACTTCTTGGTTCATAGAAAGCAAAGATTCGCCAAGAGGCTAGCCATGTTGGCTAATGGAACTGGGATCACACCTATTTACCAAGTGGCGCAAACGATTCTGAAGGACCCAGAGGACCGCACAAAGATGCATGAGGTCTATGCGAACAAAACTGAGGATGATATTTTGTTGAAGGACGAAATGGATGTGTGGGAAAAAACACATTGTGATCGATTCAAGGTGTGGTATGTGGTTGGAACTGCTAGGGAGGGATGGGGATACAGTGTGGGGTTCATCACAGAAAGTATCACGAGGGAGCACCTTCCAGAAACGTCAAGGGATGCCTTAGCTTTCTTTGACTTGTGGACCACCACCTATGATTCAATTCGCAGTGCAACCTAA
>Glyma13g02535.1 sequence type=predicted peptide gene model=Glyma13g02535 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQEILPINSFTMQYLLKGYAYTGGGRKLTRVEVTLDVRKTWRVCKLDRTEKPNKYGKYCCWCFWSLELEVMNLLGTKEIAGLMNNCWFRVKTNVAKPHKGEIGIVFEHPTQPANQPGGWMVKEKHLEKSLEKLPTLRKSGSTQSMNTSSKMFTISEVKKHCTSDSTWIIIHGHVYDCTRFLKDHPGGVDSILINADTDCTEEFDAIHSDKAKQMLQDFRIGDLMSTCRKLITTPPPPREKISCKLVSKTSISHDDQLLGLPVGKHIFLCTTINDKLCMRAYTPTSSVDEVGFSELVIKVYFKACTPSSQTEDSCLNIWTPSPLGHIEYTARGNFLVHRKQRFAKRLAMLANGTGITPIYQVAQTILKDPEDRTKMHEVYANKTEDDILLKDEMDVWEKTHCDRFKVWYVVGTAREGWGYSVGFITESITREHLPETSRDALAFFDLWTTTYDSIRSAT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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