Glyma13g02510 - SoyBase

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Report for Sequence Feature Glyma13g02510

Feature Type:	gene_model
Chromosome:	Gm13
Start:	2396066
stop:	2401088
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g02510

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G77760	AT	Annotation by Michelle Graham. TAIR10: nitrate reductase 1 \| chr1:29236005-29239367 REVERSE LENGTH=917	SoyBase	E_val: 0	ISS
GO:0006809	GO-bp	Annotation by Michelle Graham. GO Biological Process: nitric oxide biosynthetic process	SoyBase	N/A	ISS
GO:0009416	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to light stimulus	SoyBase	N/A	ISS
GO:0042128	GO-bp	Annotation by Michelle Graham. GO Biological Process: nitrate assimilation	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005506	GO-mf	Annotation by Michelle Graham. GO Molecular Function: iron ion binding	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0008940	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nitrate reductase activity	SoyBase	N/A	ISS
GO:0009055	GO-mf	Annotation by Michelle Graham. GO Molecular Function: electron carrier activity	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0020037	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heme binding	SoyBase	N/A	ISS
GO:0030151	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molybdenum ion binding	SoyBase	N/A	ISS
GO:0043546	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molybdopterin cofactor binding	SoyBase	N/A	ISS
GO:0046857	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor	SoyBase	N/A	ISS
GO:0046872	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metal ion binding	SoyBase	N/A	ISS
GO:0050660	GO-mf	Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding	SoyBase	N/A	ISS
KOG0535	KOG	Sulfite oxidase, molybdopterin-binding component	JGI		ISS
PTHR19370	Panther	NADH-CYTOCHROME B5 REDUCTASE	JGI		ISS
PTHR19370:SF5	Panther	NITRATE REDUCTASE	JGI		ISS
PF00173	PFAM	Cytochrome b5-like Heme/Steroid binding domain	JGI		ISS
PF00174	PFAM	Oxidoreductase molybdopterin binding domain	JGI		ISS
PF00175	PFAM	Oxidoreductase NAD-binding domain	JGI		ISS
PF00970	PFAM	Oxidoreductase FAD-binding domain	JGI		ISS
PF03404	PFAM	Mo-co oxidoreductase dimerisation domain	JGI		ISS
UniRef100_I1LW34	UniRef	Annotation by Michelle Graham. Best UniRef hit: Nitrate reductase n=1 Tax=Glycine max RepID=I1LW34_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1LW34	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nitrate reductase n=1 Tax=Glycine max RepID=I1LW34_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g02510

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g02510

Paralog	Evidence	Comments
Glyma14g33480	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g02510 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g084000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g02510

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g02510

Limit To All Plant Sequences

>Glyma13g02510.1   sequence type=CDS   gene model=Glyma13g02510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGCTTCAGTCGACAACCGTCAATACGGCACCCACATAAACGCCGTCGTTCGCGCTTGCGGCCCAGACTTCAATACCCCTCTCCCGTCGGATTTCGATCTGGACTCATCCAGCGACGACGAAGACCAAAACGACGACGCTTCGTATCTCAAGGAGTTGATACAAAAAGCGAACGCGGAAACCGAGGCGTCGCTGTTGGACCCGCGAGACGAGGGAACCGCGGACCAGTGGATCCCGCGGAACGCCTCCATGGTGCGGCTCACAGGGAAGCACCCCTTCAACGCGGAGGCCCCACTCCCCCGCCTTATGCACCACGGCTTCATCACCCCATCGCCACTCCACTACGTCCGCAACCACGGTCCAGTTCCCAAGATCAAATGGGATGAATGGACCGTGGAAGTGACTGGGTTGGTCAAACGATCAACCCACTTCACCATGGAGAAACTTATGAGGGAATTCCCTCACCGCGAGTTTCCCGCCACACTAGTGTGTGCGGGAAATCGGCGCAAAGAGCATAACATGGTGAAGCAGAGCATCGGCTTCAACTGGGGTGCCGCCGGGGCCTCCACCTCCGTGTGGCGGGGGGTCCCGCTGCGTCATGTGCTCAAACGCTGTGGGATCCTCGCCCGTATGAAGGGCGCCATGTACGTGTCCTTCGAGGGCGCCGAGGATCTCCCCGGGGGTGGTGGGTCCAAGTATGGAACCAGCGTCAAGAGGGAGATGGCCATGGATCCGTCGCGTGACATCATTCTCGCGTTCATGCAAAACGGCGAGCCGTTGGCGCCGGATCATGGATTTCCCGTGCGCATGATTATTCCGGGGTTCATCGGTGGAAGAATGGTGAAATGGCTCAAACGCATTGTCGTTACTGAGCATGAGTGCGATAGTCATTATCATTATAAGGATAATAGAGTACTCCCTTCCCATGTTGATGCAGAACTTGCTAATGACGAAGGTTGGTGGTACAAGCCAGAATACATCATCAACGAGTTGAATATAAACTCAGTGATAACTACGCCTTGTCACGAGGAGATCTTGCCCATCAACTCATGGACTACACAGAGGCCTTACGTAATCAGAGGCTATGCATATTCCGGTGGTGGAAGGAAAGTGACACGTGTGGAGGTAACACTTGATGGTGGAGAAACATGGCACGTGTGCACATTGGACCATACTGAGAAACCTAACAAATATGGCAAGTATTGGTGCTGGTGCTTCTGGTCTTTGGAGGTGGAGGTGCTTGACCTACTTGGGGCCAAGGAGATTGCGGTTCGAGCTTGGGATGAAGGTCTCAACACTCAGCCTGAACACCTCATTTGGAATGTTATGGGCATGATGAATAACTGCTGGTTCAGAGTGAAAACAAATGTGTGCAAGCCCCACAAGGGTGAGATTGGCATAGTGTTTGAGCATCCAACCCAACCAGGCAACCAACCCGGTGGCTGGATGGCAAAGGAAAAACATTTGGAAAAATCACAAAAGCCAAAACCAACCCTAAAAAAGAGTGTCTCCACACCATTCATGAACACTTCCTCAAAAATGTTCTCCATCTCCGAAGTGAAAAAACATTCCAACCCTGACTCTGCTTGGATCATTGTCCACGGTCACGTCTATGATTGCACCCGCTTCCTCAAAGATCACCCCGGTGGTACTGACAGCATCCTCATCAATGCTGGCACCGACTGCACCGAAGAGTTTGACGCCATCCATTCTGACAAAGCAAAAAAATTGCTTGAAGATTACCGAATCGGGGAGCTCATCACCACTGGCTACACCTCAGACTCATCGCCCAACAACTCCGTGCATGGCAATTCCGAATTCACTCATTTGGCCCCTATTAAGGAAACTACAACACCACCATCACGTAGTGTGGCTCTCAACCCACGCGAGAAAATCCCATGCAAGCTCGTGTCAAAGACCTCCATTTCTCATGACGCGAGGCTATTCCGTTTTGCATTACCCTCAGAGGACCAACTCTTGGGATTATCCGTGGGGAAACACATTTTCTTGTGTGCCACCATCGACGGCAAGCTATGCATGCGAGCCTACACTCCAACAAGTAGTGTGGATGAAGTGGGTTTCTTTGATCTACTCATCAAGGTGTACTTCAAAGGTGTGCATCCCAAGTTTCCAAATGGAGGACTCATGTCTCAACATTTGGACTCTCTACCCATTGGATCCATGTTGGACGTGAAGGGCCCATTAGGTCACATAGAATACACCGGAAGAGGCAACTTCATGGTTCATGGAAAACCAAGATTCGCCAAGAGGTTGGCCATGTTGGCTGGTGGAACTGGGATCACGCCCATTTACCAAGTGGCGCAAGCGATTTTGAAGGACCCAGAGGACCACACCGAAATGCATGTAGTGTATGCGAATCGCACAGAGGATGATATATTACTGAGGGAGGAGTTGGATGAGTGGGCGAAGATACATAATGACCGGTTCAAGCTATGGTACGTGGTGGAAATCGCAAAGGAAGGGTGGAAATACAGTGTAGGGTTCATCACAGAGAGTATCACGAGGGAGCACCTTCCAAAAGCGTCGAGGGATTCCTTGGCTTTGACATGTGGGCCACCACCCATGATTCAGTTTGCAGTGCAGCCTAATTTGGAGAAAATGGGATATGATATCAAGAACGATTTGCTTGTGTTTTAG

Predicted protein sequences of Glyma13g02510

Limit To All Plant Sequences

>Glyma13g02510.1   sequence type=predicted peptide   gene model=Glyma13g02510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAASVDNRQYGTHINAVVRACGPDFNTPLPSDFDLDSSSDDEDQNDDASYLKELIQKANAETEASLLDPRDEGTADQWIPRNASMVRLTGKHPFNAEAPLPRLMHHGFITPSPLHYVRNHGPVPKIKWDEWTVEVTGLVKRSTHFTMEKLMREFPHREFPATLVCAGNRRKEHNMVKQSIGFNWGAAGASTSVWRGVPLRHVLKRCGILARMKGAMYVSFEGAEDLPGGGGSKYGTSVKREMAMDPSRDIILAFMQNGEPLAPDHGFPVRMIIPGFIGGRMVKWLKRIVVTEHECDSHYHYKDNRVLPSHVDAELANDEGWWYKPEYIINELNINSVITTPCHEEILPINSWTTQRPYVIRGYAYSGGGRKVTRVEVTLDGGETWHVCTLDHTEKPNKYGKYWCWCFWSLEVEVLDLLGAKEIAVRAWDEGLNTQPEHLIWNVMGMMNNCWFRVKTNVCKPHKGEIGIVFEHPTQPGNQPGGWMAKEKHLEKSQKPKPTLKKSVSTPFMNTSSKMFSISEVKKHSNPDSAWIIVHGHVYDCTRFLKDHPGGTDSILINAGTDCTEEFDAIHSDKAKKLLEDYRIGELITTGYTSDSSPNNSVHGNSEFTHLAPIKETTTPPSRSVALNPREKIPCKLVSKTSISHDARLFRFALPSEDQLLGLSVGKHIFLCATIDGKLCMRAYTPTSSVDEVGFFDLLIKVYFKGVHPKFPNGGLMSQHLDSLPIGSMLDVKGPLGHIEYTGRGNFMVHGKPRFAKRLAMLAGGTGITPIYQVAQAILKDPEDHTEMHVVYANRTEDDILLREELDEWAKIHNDRFKLWYVVEIAKEGWKYSVGFITESITREHLPKASRDSLALTCGPPPMIQFAVQPNLEKMGYDIKNDLLVF*

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