Glyma13g02370 - SoyBase

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Report for Sequence Feature Glyma13g02370

Feature Type:	gene_model
Chromosome:	Gm13
Start:	2250258
stop:	2252583
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g02370

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G22030	AT	Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Protein BYPASS related (InterPro:IPR008511); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77855.1); Has 99 Blast hits to 99 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr1:7759337-7760415 REVERSE LENGTH=333	SoyBase	E_val: 2.00E-101	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1LW25	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LW25_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9LM58	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F2E2.8 n=1 Tax=Arabidopsis thaliana RepID=Q9LM58_ARATH	SoyBase	E_val: 1.00E-98	ISS

Expression Patterns of Glyma13g02370

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g02370

Paralog	Evidence	Comments
Glyma14g33790	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g02370 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g085000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g02370

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g02370

Limit To All Plant Sequences

>Glyma13g02370.2   sequence type=CDS   gene model=Glyma13g02370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTAAGTGCCCATGTAAAAAAAATGATGATTTATTCCTGATTAAACCTCTCAATTTAAATATCTCCCTCCTTTCCATCCCACACTCCCCCCACCGTTTACCGTATAGACCACAACACGCGAACAACACAAAGACATCAATCTCTTGTTGTTGTTGTTGTTGTTTTTCCAGAATGGACCCTTGTCCTTCATCGAACACGAACACCGTGAACGGTTTCTACACGTTCGTGAGCCGGGGAATGGAGGAGCTGGAGCGAGCCTTCCTAGCCAACAACAACTTCATCTCCGTCCAGTTCCTCCAGAAGGTGGTGTCCCTCCTCCGCTCCCTCCACACCCAGCTCACCCTTCTCGTCCACAAGCTCCAGCTCCCCCTCGGCGACAAGTGGCTCGACGAGTACATGGACGAGACCTCCAAGCTCTGGGAAACCTCCCACCTCCTTAAGTCCGCCATCTCCAACTTCGAACCTTTCTACTCACAGGGCTTCAACCTTCTCTCCTCCCTCGACTCATCCCACCCCCACCTCTCCCCCCAGATAGTGAGGGCGATATCAGGGTGTAGAAGAGAGGCTTTGGGATTGGAGGAGCAGAACCGTGCTCTGATGGAGACTCGGATCCACACGCTGTGTCTGCGTTTAGACGAGAGGGTGTCCGTGGAGTCTAAGCTGAACGGCTTCAACGGCTTCAGGGGAGTTCTCTACGCAATGAGGAACGTGAGTTCGATGCTTTTAATGATCCTGCTGCACGGTTTGGTCTACTGCTGGCCGGAAACCTCGGAGTTGGTCGCCGGAGGGTACGAGGGAGGGAGGATGTTTCTGGGGTCGGCGGTGATGGTATCGGCGGCGAGACTGAGGCAGCGGGTGGCGGTGGAGATGCGCGGCGCGGCGGGGCCGGGGATTTTGCTGTACGAGTTTAGGAGGGCTAGGGTGGCTGTGGAGGAGCTGAGAGGGGAATTGGAGGAAGCCGAAGGTGGTGTTAGGGAGAGAGTGGAGAGTGTTAGAGTGTGTTTTGGGGTGCTTAGATCTGGAGCTGAGAACATTGTTTGCCAGCTTGATGATTTCTTTGATGAGATTGTGGAGGGGAGGAAGAAGCTTTTGGATTTTTGCAGTCATAGGTAA

Predicted protein sequences of Glyma13g02370

Limit To All Plant Sequences

>Glyma13g02370.2   sequence type=predicted peptide   gene model=Glyma13g02370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVKCPCKKNDDLFLIKPLNLNISLLSIPHSPHRLPYRPQHANNTKTSISCCCCCCFSRMDPCPSSNTNTVNGFYTFVSRGMEELERAFLANNNFISVQFLQKVVSLLRSLHTQLTLLVHKLQLPLGDKWLDEYMDETSKLWETSHLLKSAISNFEPFYSQGFNLLSSLDSSHPHLSPQIVRAISGCRREALGLEEQNRALMETRIHTLCLRLDERVSVESKLNGFNGFRGVLYAMRNVSSMLLMILLHGLVYCWPETSELVAGGYEGGRMFLGSAVMVSAARLRQRVAVEMRGAAGPGILLYEFRRARVAVEELRGELEEAEGGVRERVESVRVCFGVLRSGAENIVCQLDDFFDEIVEGRKKLLDFCSHR*

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