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Integrating Genetics and Genomics to Advance Soybean Research


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Report for Sequence Feature Glyma13g01980

Feature Type:gene_model
Chromosome:Gm13
Start:1800536
stop:1801737
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g01980
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G08685AT Annotation by Michelle Graham. TAIR10: Pollen Ole e 1 allergen and extensin family protein | chr4:5550563-5551259 FORWARD LENGTH=159 SoyBaseE_val: 2.00E-53ISS
GO:0006816GO-bp Annotation by Michelle Graham. GO Biological Process: calcium ion transport SoyBaseN/AISS
GO:0007030GO-bp Annotation by Michelle Graham. GO Biological Process: Golgi organization SoyBaseN/AISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0019344GO-bp Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process SoyBaseN/AISS
GO:0042546GO-bp Annotation by Michelle Graham. GO Biological Process: cell wall biogenesis SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF01190PFAM Pollen proteins Ole e I like JGI ISS
UniRef100_B7FN25UniRef Annotation by Michelle Graham. Most informative UniRef hit: Pollen allergen Phl p n=1 Tax=Medicago truncatula RepID=B7FN25_MEDTR SoyBaseE_val: 2.00E-60ISS
UniRef100_I1LW01UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LW01_SOYBN SoyBaseE_val: 2.00E-116ISS

Expression Patterns of Glyma13g01980
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g01980 not represented in the dataset
Glyma13g01980 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g01980 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g087700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g01980
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g01980
>Glyma13g01980.1   sequence type=CDS   gene model=Glyma13g01980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGTGAGAATAGCCTTTATGGTAGTTTTGTGTGTTTTTCCGGCGATGGTCTCAGCCATACGCCCTCACTTAACCCCTTTCTATGTGAAGGGTCGCGTGTTTTGTGACCCTTGCCGTGCCGGTTTTGAGACTCCTCTAACCACCTACATTGCTGGTGCCGAGGTTACTCTGCAATGCAAGGACAGAATCACGAACAACAATGTGTACAGCAAGCAGGTTAAGACTGATTCAACAGGATCATTTACGATCTTCGTGGACGCGAATCAAGCAAATCAAAATTGTGATGCGAGTCTAGTAACAAGTCCTCTACGTGATTGCAAAGAGCCCACTCCAGGCCGTGACCATACACGTGTTAATCTCAATCGCTTCAATGGCATTGCCACCAATGATAGATTTGTCAACAACTTGGGTTTCATGAAGGAAATTGTTGCATCTAGTTGTGCAAAGATTTTCAAGAGTTACCAAGAGTTAGGTAATGGGAATTAA
Predicted protein sequences of Glyma13g01980
>Glyma13g01980.1   sequence type=predicted peptide   gene model=Glyma13g01980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGVRIAFMVVLCVFPAMVSAIRPHLTPFYVKGRVFCDPCRAGFETPLTTYIAGAEVTLQCKDRITNNNVYSKQVKTDSTGSFTIFVDANQANQNCDASLVTSPLRDCKEPTPGRDHTRVNLNRFNGIATNDRFVNNLGFMKEIVASSCAKIFKSYQELGNGN*






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