Glyma13g01960 - SoyBase

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Report for Sequence Feature Glyma13g01960

Feature Type:	gene_model
Chromosome:	Gm13
Start:	1771433
stop:	1777837
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g01960

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G22180	AT	Annotation by Michelle Graham. TAIR10: Sec14p-like phosphatidylinositol transfer family protein \| chr1:7828434-7829745 REVERSE LENGTH=314	SoyBase	E_val: 3.00E-131	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0031348	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG1470	KOG	Phosphatidylinositol transfer protein PDR16 and related proteins	JGI		ISS
PTHR10174	Panther	RETINALDEHYDE BINDING PROTEIN-RELATED	JGI		ISS
PTHR10174:SF78	Panther	SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLY	JGI		ISS
PF00650	PFAM	CRAL/TRIO domain	JGI		ISS
PF03765	PFAM	CRAL/TRIO, N-terminus	JGI		ISS
UniRef100_G7KA58	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Clavesin n=1 Tax=Medicago truncatula RepID=G7KA58_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1LVZ9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LVZ9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g01960

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g01960

Paralog	Evidence	Comments
Glyma14g34470	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g01960 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g087900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g01960

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g01960

Limit To All Plant Sequences

>Glyma13g01960.3   sequence type=transcript   gene model=Glyma13g01960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GATCACACAGTGCGCGAGCGCTTACATAAACAACATATCGGAATCATCGTTCATTCAGAGTCAGCATCGCTATCTCCAAAACAAAAGTACTACCGTTTTTTCGTCTTCTCCATTTTCTTCATCAGCATAGCGACACAAACGCACAACAAGCACCGTTGACTTTTTCCAATTTTCCAATTTCCTCGGTGATTCTATCATCTCCGTCACAATCGCGCGCCAAACGCTGAATCGATCGGTGCCACCGTGCCACCACTCAGTATTCATTTTTGACTTTTAGAGAGAGTCTCTAACAGGCCAACATGAGTGTGGATTCAAAGAAAAGTGCCTCTAATGGCCAGGAGAAAATGTTGCTATCACAAGAACAGCAAGCATTGATCAATGAGGTGAGAAAGTTAATCGGGCCACAGTCTGGTAAGGCGTCCATTTTTTGTTCTGATGCATGCATCTCAAGGTATTTGAGAGCACGGAATTGGAATGTCAAGAAGGCAGTGAAAATGTTGAAGCTGACCCTGAAATGGAGAGAGGAATACAAACCAGAAGAGATTCGCTGGGAAGATATTGCTCATGAAGCAGAGACAGGAAAAATCTATAGAACAAATTACATTGACAAGCATGGGAGAACAGTCCTAGTAATGAGACCTAGTCGTCAGAACTCGAAATCAACAAAAGGCCAAATTAAATATTTGGTATACTGCATGGAGAATGCTATTCTAAATCTTCCACCAGAACAGGAACAGATGGTCTGGTTGATTGATTTCCAGGGTTTCAATATGTCACACATATCAATAAAGGTGACACGTGAAACAGCCCATGTATTACAAGAACATTATCCTGAACGTCTTGGTCTGGCAATACTGTACAATGCACCTAAGTTCTTTGAACCATTTTTCACGATGGTAAAGCCCTTATTAGAGACTAAGACTTATAATAAAGTCAAGTTCGGTTACTCTGATGATCAGAACACCAAGAAGATTATGGAGGATTTGTTTGATTTTGATCATCTTGAATCTGCATTTGGCGGGAATGATGATACAGGATTTGACATAAATAGATATGCTGAGAGAATGAAAGAGGATGATAAGAAGACTTACTCTCTCTGGACAAGGGAAAACTCTCCACCATCAGTCCCAAATCTTGCTCTTTCTTTAGATTCGACTAGGTTAGAATCAGATACTGATGCTTCAGACAGTGAGAAAATAGACTCTTCCCCTGACCTCGTGATGGATACAGGTATCATTAACCCTGATCAGAAAAGCTTGGTTAATGAAGGAGAAAAAAATGCCAGTGCAGATATTCATTAGAATGAGAAATTACATACCTTGGGCCTTTGAAATAACATACAGGCACTGAGGATACAATATGCTATGAGAATTCTTATTTTGAAGTTAGAATCAAGAAACCTTTTGTTAGTTTGATGTTTGGATTTAACATGATCACAGATGTTTTTGCTTTGTGAATTCTATCTTTTAACCGGCATGAAATGCTTGCTTGTGCAGTCAGCAGTGTTTTGCTGCTGTTGTGGTAGAAATTTTTTTTCCTCCCTCGTGGATGGAAGAATGGTTTTAGTTATTTATAGCAAGCAGGTTCTTCTTACCCTTCACCCAATATCATGCTTGTGTAGGGTAGGGTAGTAAGGTTTCATGTGGATTTGTTTCTTTTAAAAGAGATGAGATGTGCAAAGTAAAAAAAATAATAAAGGTATATGTAACCATTGATTTAAAATTAGTCAAGATTACAAGG

Coding sequences of Glyma13g01960

Limit To All Plant Sequences

>Glyma13g01960.2   sequence type=CDS   gene model=Glyma13g01960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTGTGGATTCAAAGAAAAGTGCCTCTAATGGCCAGGAGAAAATGTTGCTATCACAAGAACAGCAAGCATTGATCAATGAGGTGAGAAAGTTAATCGGGCCACAGTCTGGTAAGGCGTCCATTTTTTGTTCTGATGCATGCATCTCAAGGTATTTGAGAGCACGGAATTGGAATGTCAAGAAGGCAGTGAAAATGTTGAAGCTGACCCTGAAATGGAGAGAGGAATACAAACCAGAAGAGATTCGCTGGGAAGATATTGCTCATGAAGCAGAGACAGGAAAAATCTATAGAACAAATTACATTGACAAGCATGGGAGAACAGTCCTAGTAATGAGACCTAGTCGTCAGAACTCGAAATCAACAAAAGGCCAAATTAAATATTTGGTATACTGCATGGAGAATGCTATTCTAAATCTTCCACCAGAACAGGAACAGATGGTCTGGTTGATTGATTTCCAGGGTTTCAATATGTCACACATATCAATAAAGGTGACACGTGAAACAGCCCATGTATTACAAGAACATTATCCTGAACGTCTTGGTCTGGCAATACTGTACAATGCACCTAAGTTCTTTGAACCATTTTTCACGATGGTAAAGCCCTTATTAGAGACTAAGACTTATAATAAAGTCAAGTTCGGTTACTCTGATGATCAGAACACCAAGAAGATTATGGAGGATTTGTTTGATTTTGATCATCTTGAATCTGCATTTGGCGGGAATGATGATACAGGATTTGACATAAATAGATATGCTGAGAGAATGAAAGAGGATGATAAGAAGACTTACTCTCTCTGGACAAGGGAAAACTCTCCACCATCAGTCCCAAATCTTGCTCTTTCTTTAGATTCGACTAGGTTAGAATCAGATACTGATGCTTCAGACAGTGAGAAAATAGACTCTTCCCCTGACCTCGTGATGGATACAGGTATCATTAACCCTGATCAGAAAAGCTTGGTTAATGAAGGAGAAAAAAATGCCAGTGCAGATATTCATTAG

>Glyma13g01960.3   sequence type=CDS   gene model=Glyma13g01960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTGTGGATTCAAAGAAAAGTGCCTCTAATGGCCAGGAGAAAATGTTGCTATCACAAGAACAGCAAGCATTGATCAATGAGGTGAGAAAGTTAATCGGGCCACAGTCTGGTAAGGCGTCCATTTTTTGTTCTGATGCATGCATCTCAAGGTATTTGAGAGCACGGAATTGGAATGTCAAGAAGGCAGTGAAAATGTTGAAGCTGACCCTGAAATGGAGAGAGGAATACAAACCAGAAGAGATTCGCTGGGAAGATATTGCTCATGAAGCAGAGACAGGAAAAATCTATAGAACAAATTACATTGACAAGCATGGGAGAACAGTCCTAGTAATGAGACCTAGTCGTCAGAACTCGAAATCAACAAAAGGCCAAATTAAATATTTGGTATACTGCATGGAGAATGCTATTCTAAATCTTCCACCAGAACAGGAACAGATGGTCTGGTTGATTGATTTCCAGGGTTTCAATATGTCACACATATCAATAAAGGTGACACGTGAAACAGCCCATGTATTACAAGAACATTATCCTGAACGTCTTGGTCTGGCAATACTGTACAATGCACCTAAGTTCTTTGAACCATTTTTCACGATGGTAAAGCCCTTATTAGAGACTAAGACTTATAATAAAGTCAAGTTCGGTTACTCTGATGATCAGAACACCAAGAAGATTATGGAGGATTTGTTTGATTTTGATCATCTTGAATCTGCATTTGGCGGGAATGATGATACAGGATTTGACATAAATAGATATGCTGAGAGAATGAAAGAGGATGATAAGAAGACTTACTCTCTCTGGACAAGGGAAAACTCTCCACCATCAGTCCCAAATCTTGCTCTTTCTTTAGATTCGACTAGGTTAGAATCAGATACTGATGCTTCAGACAGTGAGAAAATAGACTCTTCCCCTGACCTCGTGATGGATACAGGTATCATTAACCCTGATCAGAAAAGCTTGGTTAATGAAGGAGAAAAAAATGCCAGTGCAGATATTCATTAG

Predicted protein sequences of Glyma13g01960

Limit To All Plant Sequences

>Glyma13g01960.2   sequence type=predicted peptide   gene model=Glyma13g01960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSVDSKKSASNGQEKMLLSQEQQALINEVRKLIGPQSGKASIFCSDACISRYLRARNWNVKKAVKMLKLTLKWREEYKPEEIRWEDIAHEAETGKIYRTNYIDKHGRTVLVMRPSRQNSKSTKGQIKYLVYCMENAILNLPPEQEQMVWLIDFQGFNMSHISIKVTRETAHVLQEHYPERLGLAILYNAPKFFEPFFTMVKPLLETKTYNKVKFGYSDDQNTKKIMEDLFDFDHLESAFGGNDDTGFDINRYAERMKEDDKKTYSLWTRENSPPSVPNLALSLDSTRLESDTDASDSEKIDSSPDLVMDTGIINPDQKSLVNEGEKNASADIH*

>Glyma13g01960.3   sequence type=predicted peptide   gene model=Glyma13g01960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSVDSKKSASNGQEKMLLSQEQQALINEVRKLIGPQSGKASIFCSDACISRYLRARNWNVKKAVKMLKLTLKWREEYKPEEIRWEDIAHEAETGKIYRTNYIDKHGRTVLVMRPSRQNSKSTKGQIKYLVYCMENAILNLPPEQEQMVWLIDFQGFNMSHISIKVTRETAHVLQEHYPERLGLAILYNAPKFFEPFFTMVKPLLETKTYNKVKFGYSDDQNTKKIMEDLFDFDHLESAFGGNDDTGFDINRYAERMKEDDKKTYSLWTRENSPPSVPNLALSLDSTRLESDTDASDSEKIDSSPDLVMDTGIINPDQKSLVNEGEKNASADIH*

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